Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1545
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    27   0.75 
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    24   5.3  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   7.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    23   9.2  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 161 VSAQKKGYTQGRKALQYHQY 220
           V+  +  Y +GR +L+YHQY
Sbjct: 389 VAGTEPAYARGRNSLEYHQY 408


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 133 SLRGFLQRFGVSPKKGVHTRAQGASVPPIYTN 228
           SL+ F +  G+  K G H  A G  +P  +TN
Sbjct: 151 SLKVFEENGGIYIKIGQHLSAMGYVIPKEWTN 182


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 48  NVSPGTEPESSKSNNS 1
           +V+PG+ PE SKSN +
Sbjct: 745 DVAPGSYPEPSKSNEN 760


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 186 HKGARRFSTTNIYQYML 236
           HKG  R+ST  +  Y+L
Sbjct: 348 HKGKSRYSTIKVLDYLL 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,978
Number of Sequences: 5004
Number of extensions: 27127
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)