Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1545
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617 28 1.6
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 27 3.7
05_01_0213 - 1606383-1606816,1607695-1608355 27 4.9
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 26 6.4
07_03_1026 - 23369298-23370326 26 8.5
07_01_0652 + 4895366-4895483,4895661-4896262 26 8.5
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 26 8.5
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 26 8.5
>10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617
Length = 245
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 239 LQHILVYIGGTEAPCALVCTPFFGL-TPNL*RNPRSERECK 120
L H+L+++ + PC+ C FFGL + +N ++ E K
Sbjct: 194 LSHMLLWLTASLLPCSTSCEVFFGLCSAEAKKNCKARNEVK 234
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 56 GQGSISQVREQGQFFNEFLNLTCTPFRYGDFF 151
G G IS++RE+ + E L LT PFR FF
Sbjct: 22 GGGVISEIREKHKLELENLTLTKHPFRTLRFF 53
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 21 SRVLSQARRWVPVKAQYLK*ENRDSSLMSF 110
SR +S A W P A YLK E + ++SF
Sbjct: 80 SRSVSSAEGWPPPPAPYLKEEGDEFIVLSF 109
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 158 SVSAQKKGYTQGRKALQYHQYIPI 229
S+SAQ+ GY +GR Y ++PI
Sbjct: 915 SLSAQQFGYAKGRDPDPYGDHVPI 938
>07_03_1026 - 23369298-23370326
Length = 342
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 156 SLKKSP*RKGVQVKLRNSLKNCPCSLT*DIEP*PGPNVSPGTEPESSKSNNS 1
++KK + Q K S C + + ++P P P+ +P P+ S + NS
Sbjct: 242 AIKKCKSDERRQEKDGESAGQCATTSSPRVQPSPTPSPAPAARPDPSAAENS 293
>07_01_0652 + 4895366-4895483,4895661-4896262
Length = 239
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 242 GLQHILVYIGGTEAPCALVCTPFFGL 165
G Q L Y+ TE C +C +FGL
Sbjct: 171 GWQITLDYMTSTEDTCNQICNSYFGL 196
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 140 GDFFRDSVSAQKKGYTQGRKALQYHQYIPIYVEDHLNTRRDA 265
G D VS + G+TQGRK + + I ++++ ++ R+++
Sbjct: 185 GIILEDQVSPKACGHTQGRKVVSREEAI-MHIKAAVDARKES 225
>03_05_0712 -
27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 SGSVPGETLGPGQGSISQVREQGQFFNE-FLNLTC 124
S V GE GPG GSI V +G + + L C
Sbjct: 792 SRRVTGEVSGPGPGSIEIVIRRGHIVEDGYRQLNC 826
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,782,793
Number of Sequences: 37544
Number of extensions: 167184
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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