Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1542
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28...    27   2.0  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   2.6  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   7.9  

>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 401 LHQYQQHQTT*AFITNISNTNKIHITRIQHSFKTLYNKSFYNSV 532
           +H+Y+Q +     + N  +  KI    ++H+ +TLY  +  +S+
Sbjct: 55  IHEYRQEKQRENLLKNQFSAMKIACEELKHTSETLYKAAMSDSI 98


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 155 KKEKN*LKRYRFVKTRDELDELLYIHIVFNIWKMTHLPNDLI 280
           + +KN LK++  +K +   D L    I+ N +    LPN LI
Sbjct: 368 ESQKNLLKKFENLKKKSSKDFLSPSTILSNAFSKVSLPNSLI 409


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 319 HKIITELNYTNKTINMKRNRSYRLL*KPSSISTTP 423
           + I+  L +TN ++  K    + +   PSS ST+P
Sbjct: 167 YSILASLKHTNDSLQKKELSPHEIAESPSSHSTSP 201


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 448 IRNKGLRCLVLLILMKAFTATDTI 377
           IR KGL CL L+ L+ A  A + +
Sbjct: 537 IREKGLECLSLVCLLNADLAFENV 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,949
Number of Sequences: 5004
Number of extensions: 38453
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)