Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1542
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical
           protein T23F11.3b protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 331 TELNYTNKTINMKRNRSYRLL*KPSSIST-TPNNVSLYYEY 450
           T   Y   +I++ RN++Y+ + +PS  +T  PN  SL  E+
Sbjct: 104 TSSQYGKISISLDRNQNYKSVPRPSDTTTIIPNYYSLREEF 144


>Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.3a protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 331 TELNYTNKTINMKRNRSYRLL*KPSSIST-TPNNVSLYYEY 450
           T   Y   +I++ RN++Y+ + +PS  +T  PN  SL  E+
Sbjct: 104 TSSQYGKISISLDRNQNYKSVPRPSDTTTIIPNYYSLREEF 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,180,705
Number of Sequences: 27780
Number of extensions: 203360
Number of successful extensions: 471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)