Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1542
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 405 ININNTKQRKPLLRIF 452
           ININ+ K+ K ++RIF
Sbjct: 505 ININSDKETKGMMRIF 520


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 405 ININNTKQRKPLLRIF 452
           ININ+ K+ K ++RIF
Sbjct: 505 ININSDKETKGMMRIF 520


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 303 VSNKTS*NNNRIKLYK*NNKHETK*IVSVAVKAFININNTKQ 428
           +SNKT  NNN  K    NN +          K + NIN  +Q
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNN-----CKKLYYNINYIEQ 121


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 303 VSNKTS*NNNRIKLYK*NNKHETK*IVSVAVKAFININNTKQ 428
           +SNKT  NNN  K    NN +          K + NIN  +Q
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNN-----CKKLYYNINYIEQ 121


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 303 VSNKTS*NNNRIKLYK*NNKHETK*IVSVAVKAFININNTKQ 428
           +SNKT  NNN  K    NN +          K + NIN  +Q
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNN-----CKKLYYNINYIEQ 121


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 2   LILSQXMFFKRISSIV 49
           ++LSQ MFF  IS I+
Sbjct: 273 ILLSQTMFFLLISEII 288


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 313 KHHKIITELNYTNKTINMKRNRSYRLL*KPSSISTTPNNVSLYYEYF 453
           K  KII+ L+      N   N   +L    + I   P  V +YY  F
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINHIEQIPVPVPVYYGNF 123


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 303 VSNKTS*NNNRIKLYK*NNKH 365
           +SNKT  NNN  K Y  NN +
Sbjct: 318 LSNKTIHNNNNYK-YNYNNNN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,671
Number of Sequences: 438
Number of extensions: 2848
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)