Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1541
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 77 6e-16
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 53 1e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 48 3e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 3e-06
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 5e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 2e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 42 3e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 42 4e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 40 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 3e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 6e-04
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 37 8e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 35 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 33 0.010
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.017
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.017
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.017
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 32 0.030
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.039
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.12
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.21
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.28
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 0.37
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 0.64
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 0.64
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 0.85
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 0.85
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 1.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 2.0
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 3.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 24 6.0
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 6.0
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 7.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 7.9
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 7.9
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 24 7.9
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 77.4 bits (182), Expect = 6e-16
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Frame = +1
Query: 73 NNDNSAQDITTVNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 249
+ +NS D NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 250 HSGAYGEIESVNVKTDPNTGRSRGFDFIVFKVP 348
+ +GE+ V D TGRSRGF F+ FK P
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Score = 44.8 bits (101), Expect = 4e-06
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +1
Query: 196 KLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFK 342
K+FVGG+ + T++E R+ +G + + D +TGR RGF F+ ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 52.8 bits (121), Expect = 1e-08
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = +1
Query: 163 SAEAPGRDDDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
S ++ ++ LFVG L +ETTD +L++H G G+I V + T +TG+ +GF F+ F
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 48.4 bits (110), Expect = 3e-07
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
+FVG LS+ T+ +L G G+I+S+ + TDP +GR +GF ++ F
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 42.7 bits (96), Expect = 2e-05
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 175 PGRDDDRK--LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFKVP 348
P +D + +FVG LSW D+ L YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 45.2 bits (102), Expect = 3e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 163 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIV 336
S G+++DRK LFVG L +++ + L+ H G++ SV + TD +GR +G+ F+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 337 FKVP 348
F P
Sbjct: 140 FINP 143
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.4 bits (100), Expect = 5e-06
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +1
Query: 181 RDDDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
RDD L V LS +T ++ELRD +G I+ V + D TGR++GF F+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 42.3 bits (95), Expect = 2e-05
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 181 RDDDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFK 342
+D R +FVG L++E ++ L + G G I+ V + DP T +GF +I FK
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 41.9 bits (94), Expect = 3e-05
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 187 DDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFKVP 348
D + ++VG + + T +EL+ H + G + V + D TG +GF +I F P
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 41.5 bits (93), Expect = 4e-05
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 79 DNSAQDITTVNQ--LNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 252
D + + + ++N+ ++ N E+ D ++ SA + LFV G++ + EL+
Sbjct: 61 DTAGEPLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQI 120
Query: 253 SGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
+G + V + +P T SRGF F+ F
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 39.9 bits (89), Expect = 1e-04
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 184 DDDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFK 342
D + +F+ LS++T + ++ YG IE + V + TG+S G+ F+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.7 bits (86), Expect = 3e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFKVP 348
LF+ L E D+ L+ A+G I S + TD G+S+GF F+ + P
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTP 414
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.3 bits (85), Expect = 3e-04
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFKV 345
LFV L+++T +L + G I+ V T+P TG +RG+ F+ F +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSM 55
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.5 bits (83), Expect = 6e-04
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFK 342
++VG L W T+D+ L D G + + +P TGRS+GF + F+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFE 328
Score = 23.8 bits (49), Expect = 7.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 142 GDSQDHNSAEAPGRDD--DRKLFVGGLS 219
G S SA + G+D DR+LFVG +S
Sbjct: 149 GSSSVSPSASSNGKDSEPDRQLFVGNVS 176
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.1 bits (82), Expect = 8e-04
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 130 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTG 309
E G G ++ P + VG LS++ T+ +L D G + S+ + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 310 RSRGFDFIVFK 342
RSRGF ++ F+
Sbjct: 131 RSRGFGYVEFE 141
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.1 bits (77), Expect = 0.003
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +1
Query: 187 DDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFK 342
D +++G L ++ + ++ +GE +N+ D TG+S+GF F+ ++
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 33.5 bits (73), Expect = 0.010
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
+FVG + ++ +++++ + G +++ + DP TG +G+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 32.7 bits (71), Expect = 0.017
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFK 342
LF+ LS++ T +E+ D G YG + + + NT ++RG F+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.017
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = +1
Query: 196 KLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFKVP 348
+L V + + TD++++ +G+IE V+++ D + RS+GF +I ++ P
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNP 390
Score = 32.3 bits (70), Expect = 0.023
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 187 DDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
D R +FV L+ T +EL D G + + D +GRS+G ++ F
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.017
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRD-HSGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
+FVG LS + ++ + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTG 309
+FVGGLS +++EL+ +GEI V VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.9 bits (69), Expect = 0.030
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFKVP 348
++VG + +E ++++ D G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.039
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 154 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHSGAYGEIESV 282
+++ PG+ D+ ++VG + +D+E+ H YG++ES+
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 30.3 bits (65), Expect = 0.091
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 145 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHSGAYGEIESVNVKTDPNTGRS 315
DS +S P D L+V L T +L D +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 316 RGFDFIVFK 342
+G+ F+ F+
Sbjct: 425 KGYGFVAFR 433
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 187 DDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIV 336
+ R+L+V + ++ +K++ YG++ESV + N + +GF ++V
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVV 802
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.21
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGE-IESVNVKTDPNTGRSRGFDFIVF 339
LFVG L ++ L D A G+ +++ V D N GRS+G+ F+ +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSY 147
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 28.7 bits (61), Expect = 0.28
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 193 RKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPN 303
R +F+G L +KE+ + G +G+IE + + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 0.37
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +1
Query: 85 SAQDITTVNQLNGNAEN--GGGDSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELR 246
SA++ T N N + D+ H SAE P + DD ++FVG LS T E+R
Sbjct: 2 SAEETVTQNAPNTVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIR 61
Query: 247 DHSGAYGEIESVNV 288
G + V +
Sbjct: 62 SLFETVGTVRKVTI 75
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 0.64
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 330 KVKPS*SACVWICLYINTLYFTVC 259
KV P +W C N LYF VC
Sbjct: 567 KVSPDLQTGIWSCPVQNCLYFAVC 590
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 0.64
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 193 RKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPN 303
R +F+G L T+ E+R+ +G I+ + + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 25.4 bits (53), Expect = 2.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 160 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPN 303
N A A R +++G T + L++ +GEIE VN + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 0.85
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 235 KELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVFKVP 348
++L + +G I+S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 0.85
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 199 LFVGGLSWETTDKELRDHSGAYGEIESVNVKTDPNTGRSRGFDFIVF 339
++VG LS+ TT++++ GEI + + D T GF F+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 206 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLTVVIS 93
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 190 DRKLFVGGLSWETTDKELRDHSGAYGEIESVNV--KTDPNTGRSRGFDFIVFK 342
+++++VGGLS +L +G + ++ + K+ P G + F ++ F+
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFR 55
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 169 EAPGRDDDRKLFVGGLSWETTDKELRDHSGAYGEIESV 282
E P LF+ G+ E D ++R H YG ++SV
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 24.2 bits (50), Expect = 6.0
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +1
Query: 25 HSFSLILIIRRNLVMAN-NDNSAQDITTVNQLNGNAENGGGDSQDHNSAEAPGRDDDRKL 201
H + ++++R V+ N ++S VN+ NG GD + ++ E +R +
Sbjct: 828 HGYGNDVLVQRTDVVNNFGESSHAHDNAVNEKRDLGRNGFGDVDEQDATEVYRHSIERIV 887
Query: 202 FVGGLSWETTDKELRDHSGAYGEIESV 282
L E T L S A+ E+V
Sbjct: 888 PGDYLHDEKTRDTLTRESPAFRSEEAV 914
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 6.0
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 16 RVDHSFSLILIIRRNLVMANNDNSAQDITTVNQLNGNAENGGGDSQDH---NSAEAPG 180
R F + RNL N N+ + + ++ + +GG + QDH N+ E+PG
Sbjct: 139 RAARRFRSSIAALRNL---NTQNNQSTLASNHEDENVSSSGGQEMQDHGSVNNLESPG 193
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 23.8 bits (49), Expect = 7.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 77 TIILHKILPPSTSLMEMQRTVAVIRKIIT 163
T+I PSTSL + T AVI+ I T
Sbjct: 353 TLIFQNFSSPSTSLSAPKDTPAVIQSINT 381
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 146 SPPPFSAFPLSWLTVVISCAELS 78
+PPP ++FP ++ T I+ + LS
Sbjct: 691 TPPPTTSFPSTFTTSFITSSSLS 713
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 148 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 249
++DH S E GRD R+L V + + + + +D
Sbjct: 34 TRDHKSFENLGRDQSRELAVSDFNEKQSTEPPKD 67
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 214 LSWETTDKELRDHSGAYGEIESVNVKTDP 300
+ WE +EL H GA+ + +++++ P
Sbjct: 83 IEWEHLGRELGIHGGAFKVRKEISIRSIP 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,408
Number of Sequences: 5004
Number of extensions: 26653
Number of successful extensions: 101
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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