Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1540
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...   118   9e-28
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    44   2e-05
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.8  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   5.0  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   5.0  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   6.6  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   6.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.7  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score =  118 bits (283), Expect = 9e-28
 Identities = 63/169 (37%), Positives = 95/169 (56%)
 Frame = +2

Query: 2   ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
           ALN L   V+ + +AVQRHR+TIL CL D D SI+ RA+ELS  LVN  N+R M++ELL+
Sbjct: 356 ALNMLKLVVNSEENAVQRHRSTILACLNDVDSSIQSRALELSTFLVNEANVRFMVRELLS 415

Query: 182 FLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXXXXXXX 361
           FL+    E +   +  +      +AP+ +WH DTL +V   AGN++ + T+         
Sbjct: 416 FLDNVSDELRGSTAQYITEVTNAFAPNKRWHFDTLLRVFKSAGNFVSESTL-STFLRLIA 474

Query: 362 XXXERQAYGAMRLWTSLEQSAVSGLATEKQPLIQVAAWTIGEYGDLLVS 508
              E   Y  ++L+ +L++         ++ L   A W IGEYG +L+S
Sbjct: 475 SAPELHEYAVVKLYAALKED------VSQEALTLSAFWVIGEYGQMLLS 517


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 27/68 (39%), Positives = 37/68 (54%)
 Frame = +2

Query: 2   ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
           AL  L +  +   S V      IL+CL D D SIR RA++L   +VN +NIR ++K L+ 
Sbjct: 310 ALLCLRKLANTHPSLVSAQLDIILKCLVDTDTSIRLRALDLVNEIVNKENIRTIVKTLML 369

Query: 182 FLERSDAE 205
            L  S  E
Sbjct: 370 QLIVSSDE 377


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 17  LRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQ 148
           L+ +H   +  QR  T  +  L+D  +  RR+ +E  +A+  G+
Sbjct: 242 LKEIHAKVTQQQRKNTEDVLTLRDKKLEERRKFLERDYAIKLGE 285


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 390 PCDCGLHWNNRLSRDLPQKNNL*SRL 467
           PC    HW N++++D P  +   ++L
Sbjct: 122 PCAINCHWKNKITQDEPDVDGTINKL 147


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -2

Query: 160 AADVLPVHQRERQLHGAPPDRDVRVLETLEDGGPVPLHGRGV 35
           A DVL        + GAP  R VR+LE LE       HGRG+
Sbjct: 608 AWDVLSKSFPPGSMTGAPKLRSVRMLEPLEQ------HGRGI 643


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 546 PSSSTIEMALLASDTNKSPYSPIVQAATW 460
           PSSS  E A   ++TN  P S  + +  W
Sbjct: 285 PSSSKQEHATFVANTNNQPISIYIASGPW 313


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 30/111 (27%), Positives = 45/111 (40%)
 Frame = -3

Query: 558 KSWTPSSSTIEMALLASDTNKSPYSPIVQAATWIKGCFSVASPETADCSSEVHSRMAPYA 379
           K +  ++ T+E A  A  TN +       AA   +   SVA+  T   SS V + + P A
Sbjct: 39  KVYAYTTVTLEAAASAISTNGAA-KEAATAAGDAETTSSVAASVTPAASSSVAASVTPVA 97

Query: 378 *RSVAADDMICIVLETVSSRK*LPALSRTLKSVSRCHLSEGAYRSAASTTA 226
             SVAA          V S     A S  + + S    S     S+ +++A
Sbjct: 98  SSSVAASVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEVASSTTSSA 148


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 517 QRHLYGGRRWCP 552
           Q++ YGG+ WCP
Sbjct: 530 QKYNYGGKYWCP 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,384
Number of Sequences: 5004
Number of extensions: 43629
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)