Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1540
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337... 143 1e-34
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 142 1e-34
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 91 5e-19
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 78 6e-15
01_06_1568 - 38299113-38299790,38300165-38300254,38300368-383004... 35 0.059
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270... 31 0.73
03_05_0218 + 22058304-22058795 31 0.73
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 31 0.96
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 29 2.2
02_02_0559 - 11483798-11483988,11484076-11484163,11484288-114844... 29 2.2
08_02_0596 + 19117191-19117318,19117729-19117825,19118685-191187... 29 3.9
05_06_0161 + 26078019-26078510 29 3.9
04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555 29 3.9
03_02_0723 + 10694128-10694793 28 5.1
07_03_0544 + 19309026-19310105 28 6.8
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 28 6.8
04_04_0531 - 26048558-26049082 28 6.8
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 28 6.8
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435... 28 6.8
05_01_0053 + 378123-379115 27 8.9
02_04_0391 + 22576839-22577387 27 8.9
01_06_0438 - 29376338-29377519 27 8.9
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724 27 8.9
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 27 8.9
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 27 8.9
>06_01_0475 +
3375757-3375800,3375898-3376168,3376252-3376440,
3376816-3376989,3378039-3378218,3378565-3378719,
3379509-3379599,3380023-3380186,3380791-3380845,
3380944-3381066,3381160-3381255,3381706-3381833,
3382407-3382466,3382607-3382896,3383127-3383237,
3383318-3383395,3383487-3383659,3384192-3384296,
3385017-3385112
Length = 860
Score = 143 bits (346), Expect = 1e-34
Identities = 73/169 (43%), Positives = 105/169 (62%)
Frame = +2
Query: 2 ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
ALN L++ + VDT AVQRHR TILEC+KD D+SIR+RA+EL + LVN N + + KEL+
Sbjct: 341 ALNMLMKAMEVDTQAVQRHRATILECVKDADVSIRKRALELVYLLVNDANAKSLTKELVD 400
Query: 182 FLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXXXXXXX 361
+LE SD +FK ++ + E+++ W+LD +FKVL AGNY++DD V
Sbjct: 401 YLEVSDQDFKDDLTAKICSIVEKFSQDKLWYLDQMFKVLSLAGNYVKDD-VWHALIVLIS 459
Query: 362 XXXERQAYGAMRLWTSLEQSAVSGLATEKQPLIQVAAWTIGEYGDLLVS 508
E Q Y L+ +L E++ L++VA W IGEYG++LV+
Sbjct: 460 NASELQGYSVRSLYKALLACG------EQESLVRVAVWCIGEYGEMLVN 502
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 142 bits (345), Expect = 1e-34
Identities = 73/169 (43%), Positives = 105/169 (62%)
Frame = +2
Query: 2 ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
ALN L+R + VDT AVQRHRTTILEC+KD D SIR+RA+EL F LVN N++ + KEL+
Sbjct: 348 ALNMLMRAITVDTQAVQRHRTTILECVKDADASIRKRALELVFLLVNDTNVKPLTKELVD 407
Query: 182 FLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXXXXXXX 361
+L+ +D +FK ++ + E+++ W+LD +FKVL AGN+++DD V
Sbjct: 408 YLDSADPDFKEDLTAKICSIVEKFSQEKLWYLDQMFKVLSLAGNHVKDD-VWHALVVVIS 466
Query: 362 XXXERQAYGAMRLWTSLEQSAVSGLATEKQPLIQVAAWTIGEYGDLLVS 508
E Q Y L+ +L+ G L++VA W IGEYG++LV+
Sbjct: 467 NASELQGYSVRLLYMALQAFVDQG------SLVRVAVWCIGEYGEMLVN 509
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 91.5 bits (217), Expect = 5e-19
Identities = 46/152 (30%), Positives = 88/152 (57%)
Frame = +2
Query: 47 VQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLAFLERSDAEFKAHCSS 226
++RH+ I+ LKDPDISIRRRA++L + + + N + +++ELL +L ++ + S
Sbjct: 358 IKRHQAQIITSLKDPDISIRRRALDLLYGMCDVTNAKEIVEELLQYLNTAEFAMREELSL 417
Query: 227 AVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXXXXXXXXXXERQAYGAMRLWT 406
+ AE++AP W++D + +++ KAG+++ DD + + Q Y A +
Sbjct: 418 KAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDD-IWYRVVQFVTNNEDLQPYAAAKARE 476
Query: 407 SLEQSAVSGLATEKQPLIQVAAWTIGEYGDLL 502
L++ A+ + +++V+A+ +GEYG LL
Sbjct: 477 YLDKPAL------HETMVKVSAYLLGEYGHLL 502
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 77.8 bits (183), Expect = 6e-15
Identities = 39/166 (23%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Frame = +2
Query: 5 LNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLAF 184
++ L R + ++ + H+ +++CL+DPD +++R+ EL + + N+ ++ ++ +
Sbjct: 346 IDALGRLIKINPDIAEEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEY 405
Query: 185 -LERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXXXXXXX 361
+ +D +K +S V AE++APS++W + T+ KV AG+ +
Sbjct: 406 MINITDHHYKTEIASRCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLIAE 465
Query: 362 XXXERQAYGAMRLWTSLEQSAVSGLATEKQP--LIQVAAWTIGEYG 493
E +L +S S + + K P +Q+ W +GEYG
Sbjct: 466 GFGEEDEGADSQLRSSAVDSYLRIVGEPKLPSSFLQIICWVLGEYG 511
>01_06_1568 -
38299113-38299790,38300165-38300254,38300368-38300484,
38300600-38300962
Length = 415
Score = 34.7 bits (76), Expect = 0.059
Identities = 21/44 (47%), Positives = 22/44 (50%)
Frame = +1
Query: 52 EAPDHHPRVSQGPGHLDPAARHGAVVRAGERAEHPRHDEGAAGV 183
EA RV PGH A+H VVR GER E DEG GV
Sbjct: 219 EADHEGHRVHHLPGHAGVVAQHDVVVRRGERDE---GDEGQGGV 259
>06_03_0007 -
15325720-15325739,15326236-15326383,15326512-15327025,
15327077-15327507
Length = 370
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 464 PGLKVVFLWQVPRQPIVPVKSTVAWRRTP--DAPSPLTI*SVSC 339
PG+K+ W ++P +KS WR P APSPL S SC
Sbjct: 196 PGMKLE--WPARKKPSSALKSKKVWREKPKTPAPSPLEEGSSSC 237
>03_05_0218 + 22058304-22058795
Length = 163
Score = 31.1 bits (67), Expect = 0.73
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +1
Query: 19 EDRARRHLGRAEAPDHHPRVS-QGPGHLD-PAARH--GAVVRAGERA--EHPRHDEGAAG 180
E+ RR++ R QG G PAAR GA++RAG R EH R GA G
Sbjct: 5 EEEERRNIASRRTNRGGARTGEQGCGWRSRPAARRRSGAILRAGGRTEEEHGRASRGAVG 64
Query: 181 VPGAQRRR 204
GA RRR
Sbjct: 65 --GAGRRR 70
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 185 GTPAAPSSCRGCSARSPARTTAPWRAAGS----RCPGP*D 78
GT A PS+C S+ +P T W A S RCPGP D
Sbjct: 39 GTSAYPSACASPSSTTPTPTR--WGAGASAVPPRCPGPQD 76
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 100 RDVRVLETLEDGGPVPLHGRGVDVHGPQ 17
R + V +T+ED PVP RG+D+ P+
Sbjct: 90 RALHVKKTIEDAEPVPFAPRGIDILEPK 117
>02_02_0559 -
11483798-11483988,11484076-11484163,11484288-11484405,
11484489-11484637,11484921-11484974,11485065-11485160,
11486092-11486242,11486300-11486382,11486577-11486695,
11487111-11487237
Length = 391
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 103 PAARHGAVVRAGERAEHPRHDEGAAGVPGAQR 198
PA GA AGE AEH H EG A + G+ R
Sbjct: 70 PAGDDGA---AGEGAEHGDHGEGRASINGSSR 98
>08_02_0596 +
19117191-19117318,19117729-19117825,19118685-19118788,
19119318-19119633,19120379-19120486
Length = 250
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 612 QKQAFDICQSGILQSAAQKSWT 547
Q A D+CQ +LQ+ A K WT
Sbjct: 143 QSPACDVCQDRLLQNTAYKYWT 164
>05_06_0161 + 26078019-26078510
Length = 163
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Frame = -2
Query: 166 HHAADVLP-VHQRERQLHGAPPDR------DVRVLETLEDGGPVPLHGRGVDVHG 23
H AA LP +H R+ HG P+ D + EDGG VP G D HG
Sbjct: 56 HRAAAGLPSLHSHPRR-HGPRPETTAAARGDREEVARSEDGGAVPGAGGAADAHG 109
>04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555
Length = 384
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 191 APGTPAAPSSCRGCSARSPARTTAPWRAAGSRCPGP*DTRG 69
A G A P++ S R+P A AA + CP D RG
Sbjct: 10 AAGLRAPPAAAAASSRRTPPLRVAGRAAAAAACPAASDKRG 50
>03_02_0723 + 10694128-10694793
Length = 221
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 130 RAGERAEHPRHDEGAAGVPGAQR 198
R G AE RH EGAAG G +R
Sbjct: 151 RGGRDAEAARHREGAAGEEGRER 173
>07_03_0544 + 19309026-19310105
Length = 359
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -3
Query: 588 QSGILQSAAQKSW---TPSSSTIEMALLASD 505
Q +A ++SW TPSSS +E +++ASD
Sbjct: 272 QKSSAAAAGEQSWDLPTPSSSNVEASIIASD 302
>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
Length = 265
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Frame = +1
Query: 31 RRHLGRAEAP-----DHHPRVSQGP-----GHLDPAARHGAVVRAGERAEHPRH 162
R HL A A DHHP + P GH P A+H ++ A RA RH
Sbjct: 18 RPHLSTAAAAEVSPADHHPDLLSPPFGYLPGHPRPDAKHDELILAVPRASPGRH 71
>04_04_0531 - 26048558-26049082
Length = 174
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 164 SCRGCSARSPARTTAPWRAAGSRCPG 87
S R +A+ R AP R A +RCPG
Sbjct: 4 SARSAAAKHAYRMFAPSRGAAARCPG 29
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 188 PGTPAAPSSCRGCSARSP 135
PG PAA S C GC R P
Sbjct: 8 PGRPAASSGCLGCWRRRP 25
>02_05_0461 -
29242711-29242864,29242992-29243059,29243500-29243589,
29244026-29244733
Length = 339
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 58 PDHHPRVSQGPGHLDPAARHGAVVRAGERAEHPRHDEGAA 177
P HH VS+ G + P HG V GE+A + + AA
Sbjct: 39 PKHH--VSKKTGTIRPVVEHGGVDGDGEKAGAAKRKKSAA 76
>05_01_0053 + 378123-379115
Length = 330
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 100 DPAARHGAVVRAGERAEHPRHDEGAAGVPGA 192
DPAA H + +R + PRHD PGA
Sbjct: 167 DPAADHLELTFDDDRVDLPRHDGARWSPPGA 197
>02_04_0391 + 22576839-22577387
Length = 182
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 437 QVPRQPIVPVKSTVAWRRTPDAPSP 363
Q P P P ++ VA RTP+AP P
Sbjct: 108 QRPAAPDPPPQALVAMERTPNAPDP 132
>01_06_0438 - 29376338-29377519
Length = 393
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 235 HHGAGAVRL--ELGVAALQERQQLLHHAADVLPVHQRERQLHGAPPDRDVRV 86
HH AGA E + A+ + +++++ AA + PVH P ++VR+
Sbjct: 230 HHHAGATTAGYEPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRI 281
>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
Length = 271
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 4 SQHAAEDRARRHLGRAEAPDHHPRVSQGPGHLDPAARHGAVVRAGERAEHPRH 162
S AAE H +A P PGH P A+H ++ A RA RH
Sbjct: 25 SSAAAEAVTADHHHHHDADLLSPPFDYLPGHPRPDAKHDELILAVPRASSGRH 77
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 515 SSAISMVDEDGVHDFCAAD 571
++ I+ VDEDG HD C AD
Sbjct: 45 TAIINRVDEDGRHDSCFAD 63
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 58 PDHHPRVSQGPGHLDPAARHGAVVRAGERAEHP 156
P + R GP HL +A V R+ ER HP
Sbjct: 328 PHNEAREQTGPSHLAGSAAQLQVKRSTERGPHP 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,405,103
Number of Sequences: 37544
Number of extensions: 377019
Number of successful extensions: 1626
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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