Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1540
         (614 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    28   0.28 
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    27   0.36 
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    26   1.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.6  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   4.5  
AY045760-2|AAK84943.1|  169|Anopheles gambiae D7-related 3 prote...    23   5.9  
AJ133854-1|CAB39729.1|  169|Anopheles gambiae D7-related 3 prote...    23   5.9  
AJ000035-1|CAA03871.1|  156|Anopheles gambiae D7r3 protein protein.    23   5.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.8  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   7.8  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       23   7.8  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       23   7.8  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       23   7.8  

>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 149  NIRGMMKELLAFLERSDAEFKAHCSSAVVLAAERYA-PSDKWHLD 280
            N+R M + +  FLER+  +  A C  +VVLA E +  PS+ + L+
Sbjct: 1598 NVR-MWRTVRQFLERTRQKRMAVCPPSVVLAREAFKHPSESFSLE 1641


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 27.5 bits (58), Expect = 0.36
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 149  NIRGMMKELLAFLERSDAEFKAHCSSAVVLAAERYA-PSDKWHLD 280
            N+R M + +   LER+  +  A C S+VVLA E +  PS+ + L+
Sbjct: 1601 NVR-MWRTVRQLLERTRQKRMAVCPSSVVLAREAFKHPSESFSLE 1644


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 190 LQERQQLLHHAADVLPVHQRERQLHGAPPDRDVRVLETLED 68
           L ++QQ  HH     P  Q ++Q H  P    V+    L D
Sbjct: 303 LAQQQQQQHHHHQHQPQQQHQQQYHSHPHHTPVQFKTELHD 343


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +1

Query: 61  DHHPRVSQGPGHLDPAARHGAVVRAGERAEHPRHDE----GAAGVPG 189
           D  P +S  PG+  P    G     GE+ E  RH E    G  G PG
Sbjct: 186 DGLPGLSGLPGNPGPRGYAGIPGTKGEKGEPARHPENYNKGQKGEPG 232


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 415 TIGCLGTCHRKTTFNPGCRLDYW*IWRFVSIGSQQRHLYGGRR 543
           T+ C GT  R+     G R  YW  W    I   + H YG +R
Sbjct: 267 TVACDGTMPRQPPRRQGRRPVYW--WT-SEIDRLRSHFYGMQR 306


>AY045760-2|AAK84943.1|  169|Anopheles gambiae D7-related 3 protein
           protein.
          Length = 169

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 479 IGEYGDLLVSEASSAISMVDEDGVH 553
           + + G+L+  E    + MVD DG H
Sbjct: 70  VEDNGELVFQELLGVLKMVDPDGDH 94


>AJ133854-1|CAB39729.1|  169|Anopheles gambiae D7-related 3 protein
           protein.
          Length = 169

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 479 IGEYGDLLVSEASSAISMVDEDGVH 553
           + + G+L+  E    + MVD DG H
Sbjct: 70  VEDNGELVFQELLGVLKMVDPDGDH 94


>AJ000035-1|CAA03871.1|  156|Anopheles gambiae D7r3 protein protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 479 IGEYGDLLVSEASSAISMVDEDGVH 553
           + + G+L+  E    + MVD DG H
Sbjct: 70  VEDNGELVFQELLGVLKMVDPDGDH 94


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 570  SAAQKSWTPSSSTIEMALLAS 508
            SAA KSW P+   ++ A++ +
Sbjct: 2706 SAANKSWNPAKWEVKKAIVGA 2726


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 169 LHHAADVLPVHQRERQLHGAPPDR 98
           L  AA+ L V +  R   G PP R
Sbjct: 381 LERAAEELTVRRSSRSTKGVPPQR 404


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 169 LHHAADVLPVHQRERQLHGAPPDR 98
           L  AA+ L V +  R   G PP R
Sbjct: 151 LERAAEELTVRRSSRSTKGVPPQR 174


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 169 LHHAADVLPVHQRERQLHGAPPDR 98
           L  AA+ L V +  R   G PP R
Sbjct: 157 LERAAEELTVRRSSRSTKGVPPQR 180


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 169 LHHAADVLPVHQRERQLHGAPPDR 98
           L  AA+ L V +  R   G PP R
Sbjct: 151 LERAAEELTVRRSSRSTKGVPPQR 174


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,613
Number of Sequences: 2352
Number of extensions: 12492
Number of successful extensions: 46
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)