Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1540
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical ... 182 2e-46
U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha ... 84 7e-17
AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or ad... 49 3e-06
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad... 49 3e-06
Z68880-8|CAJ43445.1| 883|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z68880-7|CAA93095.1| 870|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 1.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 1.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 1.5
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 29 2.6
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 28 6.1
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 28 6.1
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 28 6.1
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 27 8.1
>AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical
protein Y105E8A.9 protein.
Length = 829
Score = 182 bits (442), Expect = 2e-46
Identities = 91/183 (49%), Positives = 123/183 (67%)
Frame = +2
Query: 2 ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
ALNTLL+TVHVD AVQRHR ++ECLKDPDISIR+RAMEL FAL+N NI M KE+L
Sbjct: 350 ALNTLLKTVHVDYQAVQRHRNVVVECLKDPDISIRKRAMELCFALMNRTNIAIMTKEVLI 409
Query: 182 FLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXXXXXXX 361
FLE +DAEFK+ C+S + +A ERY+P+ +WHLDT+ VL AG Y+ D+ V
Sbjct: 410 FLETADAEFKSECASRMYIATERYSPNHEWHLDTMITVLRLAGKYVPDEVV-SCMIQMIS 468
Query: 362 XXXERQAYGAMRLWTSLEQSAVSGLATEKQPLIQVAAWTIGEYGDLLVSEASSAISMVDE 541
+ Q+Y +L+ + ++ A++ QPL+QVA WTIGE+GDLL+ + + E
Sbjct: 469 ANEQLQSYAVSQLYHAAQKDAINA-----QPLLQVAFWTIGEFGDLLLQPTDVDSTPISE 523
Query: 542 DGV 550
+ V
Sbjct: 524 NDV 526
>U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha
chain (clathrinassociated complex) protein 2 protein.
Length = 925
Score = 84.2 bits (199), Expect = 7e-17
Identities = 46/170 (27%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Frame = +2
Query: 14 LLRTVHVDTSAVQRHRTTILECLK-DPDISIRRRAMELSFALVNGQNIRGMMKELLAFLE 190
LL T AV++H+ TI+ LK + D+S+R+RA++L +A+ + N ++ E+LA+LE
Sbjct: 354 LLATSEFSHDAVKKHQDTIINSLKTERDVSVRQRAVDLLYAMCDRSNANQIVAEMLAYLE 413
Query: 191 RSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXXXXXXXXXX 370
+D + V + AE+YA W++D + K++ AG+Y+ ++ V
Sbjct: 414 TADYSIREEMVLKVAILAEKYATDYTWYVDVILKLIRIAGDYVSEE-VWYRVIQIVVNRE 472
Query: 371 ERQAYGAMRLWTSLEQSAVSGLATEKQPLIQVAAWTIGEYGDLLVSEASS 520
+ Q Y A ++ +L++ A + +++V + +GE+G+ + + S
Sbjct: 473 DVQGYAAKTVFEALQRPAC------HENMVKVGGYILGEFGNFIAGDERS 516
>AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform b protein.
Length = 979
Score = 48.8 bits (111), Expect = 3e-06
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
Frame = +2
Query: 2 ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
A+ +L+T AVQ H+ +L CL D D SIR R+++L + +V+ +NI ++K+L+
Sbjct: 53 AMGKILKT---HPKAVQAHKDIVLRCLDDKDESIRIRSLDLLYGMVSKKNIVEIVKKLME 109
Query: 182 FLERSD-AEFKAHCSSAVV----LAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXX 346
+E ++ + ++ S ++ + +Y + +W++ L ++ G
Sbjct: 110 HVEAAEGSHYRDELLSRIIGICSWSNYQYITNFEWYISVLVELTKVEGTEHGAKIAEQIQ 169
Query: 347 XXXXXXXXERQ-AYGAMRLWTSLEQSAVSGLATEKQPLIQV---AAWTIGEYGDLLVSEA 514
R + M L ++G A ++ + +V AAW GEY + ++
Sbjct: 170 DVTVRVESIRHFSVSQMALLVENAHVLLAGSAQQRSNMCEVLLAAAWICGEYSQHVRNQQ 229
Query: 515 SSAISMV 535
SM+
Sbjct: 230 GVLESML 236
>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform a protein.
Length = 1251
Score = 48.8 bits (111), Expect = 3e-06
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
Frame = +2
Query: 2 ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
A+ +L+T AVQ H+ +L CL D D SIR R+++L + +V+ +NI ++K+L+
Sbjct: 325 AMGKILKT---HPKAVQAHKDIVLRCLDDKDESIRIRSLDLLYGMVSKKNIVEIVKKLME 381
Query: 182 FLERSD-AEFKAHCSSAVV----LAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVXXXX 346
+E ++ + ++ S ++ + +Y + +W++ L ++ G
Sbjct: 382 HVEAAEGSHYRDELLSRIIGICSWSNYQYITNFEWYISVLVELTKVEGTEHGAKIAEQIQ 441
Query: 347 XXXXXXXXERQ-AYGAMRLWTSLEQSAVSGLATEKQPLIQV---AAWTIGEYGDLLVSEA 514
R + M L ++G A ++ + +V AAW GEY + ++
Sbjct: 442 DVTVRVESIRHFSVSQMALLVENAHVLLAGSAQQRSNMCEVLLAAAWICGEYSQHVRNQQ 501
Query: 515 SSAISMV 535
SM+
Sbjct: 502 GVLESML 508
>Z68880-8|CAJ43445.1| 883|Caenorhabditis elegans Hypothetical
protein T14G10.5b protein.
Length = 883
Score = 31.5 bits (68), Expect = 0.49
Identities = 23/105 (21%), Positives = 42/105 (40%)
Frame = +2
Query: 2 ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
A+ TL + +AV + + + DP+ SI A+ ++ +M+++
Sbjct: 315 AVRTLNKVAMAHPNAVMSCNVDLEKFITDPNRSIATLAITTLLKTGAESSVERLMQQIAG 374
Query: 182 FLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNY 316
F+ EFK A+ RY + L K+L G+Y
Sbjct: 375 FVNEISDEFKIVVVDAIRSLCSRYPRKHTVMMPFLAKMLRSDGSY 419
>Z68880-7|CAA93095.1| 870|Caenorhabditis elegans Hypothetical
protein T14G10.5a protein.
Length = 870
Score = 31.5 bits (68), Expect = 0.49
Identities = 23/105 (21%), Positives = 42/105 (40%)
Frame = +2
Query: 2 ALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLA 181
A+ TL + +AV + + + DP+ SI A+ ++ +M+++
Sbjct: 302 AVRTLNKVAMAHPNAVMSCNVDLEKFITDPNRSIATLAITTLLKTGAESSVERLMQQIAG 361
Query: 182 FLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNY 316
F+ EFK A+ RY + L K+L G+Y
Sbjct: 362 FVNEISDEFKIVVVDAIRSLCSRYPRKHTVMMPFLAKMLRSDGSY 406
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 88 PGHLDPAARHGAVVRAGERAEHPRHDEGAAGVPGA 192
PG PA GA G P+ GAAG PGA
Sbjct: 226 PGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA 260
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 88 PGHLDPAARHGAVVRAGERAEHPRHDEGAAGVPGA 192
PG PA GA G P+ GAAG PGA
Sbjct: 226 PGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA 260
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 88 PGHLDPAARHGAVVRAGERAEHPRHDEGAAGVPGA 192
PG PA GA G P+ GAAG PGA
Sbjct: 226 PGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA 260
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 88 PGHLDPAARHGAVVRAGERAEHPRHDEGAAGVPGA 192
PG PA GA G P+ GAAG PGA
Sbjct: 226 PGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGA 260
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 185 GTPAAPSSCRGCSARSPARTTAPWRA 108
G P P +C C R+PA + AP +A
Sbjct: 263 GEPGNPGTCHHCQNRAPAPSEAPGKA 288
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 25 RARRHLGRAEAPDHHPRVSQGPGHLDPAARHGAVVRAGERAEHPRHDEGAAGVPGAQR 198
RAR+ +A+ P+ QGP P++ V++ +R++ EGA G PGAQR
Sbjct: 801 RARKQAPQAQIPE-----DQGPPSPTPSSICDFPVQS-QRSQRFGAFEGAQGAPGAQR 852
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 25 RARRHLGRAEAPDHHPRVSQGPGHLDPAARHGAVVRAGERAEHPRHDEGAAGVPGAQR 198
RAR+ +A+ P+ QGP P++ V++ +R++ EGA G PGAQR
Sbjct: 821 RARKQAPQAQIPE-----DQGPPSPTPSSICDFPVQS-QRSQRFGAFEGAQGAPGAQR 872
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 38 TSAVQRHRTTILECLKDPDISIRRRAMELSFALVN 142
+S +Q++ +LE D DI +RR A+++ + +N
Sbjct: 1826 SSVIQKYWKAVLESYVDADIQLRRAAVQVVWLTLN 1860
>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
protein T05A7.11 protein.
Length = 1200
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 134 LVNGQNIRGMMKELLAFLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTL 286
++N R + ELLA L E + A+ L ++AP + W+L L
Sbjct: 217 ILNSSFSRDVAMELLAALNPKTVELRVGRFGAIRLHEAQHAPVNNWNLSHL 267
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = -2
Query: 133 RERQLHGAPPDRDVRVLETLEDGGPVPLHGRGVDVHGPQQR 11
+++ + P + + +E +++G VP+H + HG R
Sbjct: 1195 KDKHRYDGVPCKPLTAVEVMDNGKRVPIHANWIPTHGHPHR 1235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,916
Number of Sequences: 27780
Number of extensions: 271138
Number of successful extensions: 968
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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