Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1538
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   0.88 
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   4.7  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 303 SLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARSEFSCL*IFVAL 446
           S    SD +K +  + +N      P WR+    +A SE SCL ++  L
Sbjct: 314 SFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLL 361



 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 328 LKMFYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSP 444
           L  FY  F+  ++TS L   +  FS+  A+S + + L P
Sbjct: 521 LHSFYYTFRSVLVTSLLLSLKPAFSIDFAASWLAKILEP 559


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 373 NLSGARVMFSVRVASSRVYEFLSPWFPYSVVDVVLIVI*Y 492
           + S   +++ +R+  + + EF  PWF YS+  + L V+ Y
Sbjct: 31  DFSRPSLLWPLRILYATINEFNLPWFIYSLTILDLTVLKY 70


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 276 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEP 377
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,276
Number of Sequences: 5004
Number of extensions: 32210
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)