Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1538
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    30   0.79 
AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    29   2.4  
L23651-10|AAM22041.1|  821|Caenorhabditis elegans Kleisin (abnor...    27   5.6  

>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 337 FYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSPWFPYSVVDVVLIVI 486
           F  YF++ I+  N+S +  M   +   S +Y+  SP F + +  ++++ +
Sbjct: 219 FRMYFRMNILLQNVSKSYEMIQRQFFKSLIYQITSPTFTFYIPAILILTV 268


>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 344 Q*NIFRSVGETS*RNAIGNRSLRSDFN*KKQHVTASTNA*RGTRQRDGSRARHEPRN 174
           Q ++     E+S  +  GN+SL    N KK H + S    +G R+  G  A H+ R+
Sbjct: 321 QGSVSSGTSESSNGSVYGNQSLSPQRNGKKYHPSDS----KGNRKEPGKGAHHQKRD 373


>L23651-10|AAM22041.1|  821|Caenorhabditis elegans Kleisin (abnormal
           closure) familyprotein 2 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 101 HCGPWRHIQGPLLSEGRLHKKH*SHCVARAAL 196
           H   W     P+L EG   K++  H V RA +
Sbjct: 711 HVDKWHSRMEPILEEGETRKEYDVHAVGRAVI 742


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,245,716
Number of Sequences: 27780
Number of extensions: 193962
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)