Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1536
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   5.2  
01_06_1749 - 39636951-39638102                                         29   5.2  
10_08_0050 + 14469879-14470072,14470620-14471094                       28   9.0  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 639 HPSNRNALLLHGRNRQGSGTHPRGLTRGPTTSK 541
           H ++    LL GR R G G H RGL   P  S+
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSR 314


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 664 SSIVTTAAPPFKPKRITA 611
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 57  PPCLFLP*SSNAFRFEGWSSRCNYTETLELIIQGGWRIL 173
           PP  FLP S  A     W   C+   T E+ +  GWRIL
Sbjct: 34  PPSFFLPKSRRASEEIYW---CSLQSTREVRMVEGWRIL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,871,151
Number of Sequences: 37544
Number of extensions: 471354
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)