Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1535
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0538 + 4265540-4265896                                           32   0.43 
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    30   2.3  
01_01_0840 - 6557931-6558377                                           28   7.0  

>11_01_0538 + 4265540-4265896
          Length = 118

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 633 RRTLRCPRCIYLCCCADSDQVLCRPCCGYLRRCPRC 740
           R    C      CCC      LCRP  G   R P C
Sbjct: 44  REKAYCDAATGRCCCPPGSATLCRPLAGCRSRIPAC 79


>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 76  RGDHQRGLRLQRTEQRSAWC 17
           RGD QR LRL +  QR +WC
Sbjct: 111 RGDWQRSLRLFKYMQRQSWC 130


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 208 RRQRCGHRERCEL 170
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,817
Number of Sequences: 37544
Number of extensions: 285549
Number of successful extensions: 1076
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)