Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1535
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical...    30   2.1  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   8.3  
AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +3

Query: 489 CDVLRACCR*GDRSRCSLRCTCGCLQDHQSCSIFCVILLLYHSPW--WFLRRTLRCPRCI 662
           C V   C   GD +   L     C +   S  I+C+  LL   P   W  +   RC RC 
Sbjct: 563 CTVCEGCGTGGDEANLLL-----CDECDVSYHIYCMKPLLDKIPQGPWRCQWCSRCRRCN 617

Query: 663 YLCCCAD--SDQVLCRPCCGYLRRCPRC 740
           +     +  + Q LC PC   LR+CPRC
Sbjct: 618 HKAASGNDLTSQGLCFPCAS-LRKCPRC 644


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +3

Query: 489 CDVLRACCR*GDRSRCSLRCTCGCLQDHQSCSIFCVILLLYHSPW--WFLRRTLRCPRCI 662
           C V   C   GD +   L     C +   S  I+C+  LL   P   W  +   RC RC 
Sbjct: 563 CTVCEGCGTGGDEANLLL-----CDECDVSYHIYCMKPLLDKIPQGPWRCQWCSRCRRCN 617

Query: 663 YLCCCAD--SDQVLCRPCCGYLRRCPRC 740
           +     +  + Q LC PC   LR+CPRC
Sbjct: 618 HKAASGNDLTSQGLCFPCAS-LRKCPRC 644


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +3

Query: 645 RCPRCIYLCCCADSDQVLCRP-CCGYLRRCPRCG 743
           RC  C   CCC       CRP CCG    C  CG
Sbjct: 97  RCCTCCRTCCCTRCC-TCCRPCCCGCGCGCGCCG 129


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +3

Query: 645 RCPRCIYLCCCADSDQVLCRP-CCGYLRRCPRCG 743
           RC  C   CCC       CRP CCG    C  CG
Sbjct: 98  RCCTCCRTCCCTRCC-TCCRPCCCGCGCGCGCCG 130


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +3

Query: 645 RCPRCIYLCCCADSDQVLCRP-CCGYLRRCPRCG 743
           RC  C   CCC       CRP CCG    C  CG
Sbjct: 98  RCCTCCRTCCCTRCC-TCCRPCCCGCGCGCGCCG 130


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +3

Query: 645 RCPRCIYLCCCADSDQVLCRP-CCGYLRRCPRCG 743
           RC  C   CCC       CRP CCG    C  CG
Sbjct: 99  RCCTCCRTCCCTRCC-TCCRPCCCGCGCGCCGCG 131


>AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical
           protein Y46G5A.20 protein.
          Length = 109

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 138 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 19
           D F  H+  R S + S  SSS  T+S+  + S++S+DQ+G
Sbjct: 28  DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 645 RCPRCIYLCCCADSDQVLCRPCC 713
           RC  C   CCC       CRPCC
Sbjct: 99  RCCTCCRTCCCTRCC-TCCRPCC 120


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = -2

Query: 631 KNHHGLW*RSKMTQKILQD*WSWRQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRW 452
           K HH    +SK ++K+ +   +W   +  R   R RS  R Q R  S+ +  + RS  R 
Sbjct: 50  KKHHRH--KSKKSKKVRRRSKTWSSSR-SRSRSRSRSRGRSQERRRSR-KSRKSRSRSR- 104

Query: 451 LEHREQSMSRK 419
           L+HRE+ + +K
Sbjct: 105 LKHREEKIEKK 115


>AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical
           protein B0348.1 protein.
          Length = 87

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 621 WW---FLRRTLRCPRCIYLCCCADSDQVLCRPCCGYL 722
           WW   F+   L  P C +LCC +  D +   P CG L
Sbjct: 42  WWIAFFIGFFLFFPICYWLCCQSSKDTLHYCPSCGTL 78


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 283 HMSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 188
           +M M+ ++ +R+Q++ W   RL QH ++   H
Sbjct: 685 NMGMISEEMRRKQDEMWLDLRLTQHIKKHSSH 716


>Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.4 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 288 WPSIFVRHCTIVRLCCISGCDQDHFSSCF--LSIFLLVHNRSWITIFRDILCSRCSSHRR 461
           W ++  + C      C  G   D  + C   LSI L V  + ++  +    C RCS+   
Sbjct: 115 WRTVIAQDCPSACGFCNEGGCVDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAATT 174

Query: 462 ILRPRYTRSCDV 497
           +  P  T +C V
Sbjct: 175 V-APPVTNNCTV 185


>Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.1 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 288 WPSIFVRHCTIVRLCCISGCDQDHFSSCF--LSIFLLVHNRSWITIFRDILCSRCSSHRR 461
           W ++  + C      C  G   D  + C   LSI L V  + ++  +    C RCS+   
Sbjct: 115 WRTVIAQDCPSACGFCNEGGCVDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAATT 174

Query: 462 ILRPRYTRSCDV 497
           +  P  T +C V
Sbjct: 175 V-APPVTNNCTV 185


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 220 LEQHRRQRCGHRERCELSKKRP 155
           +E HRR+RC  ++RC  + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341


>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +3

Query: 657 CIYLCCCADSDQVLCRP----CCGYLRRCPRCG 743
           C+ +CCC       C P    CC Y+  C  CG
Sbjct: 197 CLAVCCCP---LTCCLPLICICCNYVDACGACG 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,682
Number of Sequences: 27780
Number of extensions: 229467
Number of successful extensions: 916
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)