Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1534
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 45 1e-05
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 43 6e-05
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 41 2e-04
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 36 0.005
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 29 0.74
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 5.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 5.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 6.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 6.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 6.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 6.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 6.9
SPCP20C8.02c |||S. pombe specific UPF0321 family protein 1|Schiz... 25 9.1
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 9.1
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +2
Query: 566 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNLQTLALNENSLTSLPDS 745
L ++ +++T LPP + L +LV GN + +P E G L+ L+ + L +N ++ +P
Sbjct: 186 LYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAE 245
Query: 746 LANLKSLK 769
L L LK
Sbjct: 246 LGTLFQLK 253
Score = 42.7 bits (96), Expect = 6e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 551 EGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNLQTLALNENSL 727
+ ++ LD S +SI ++PP + LT L E L+ N + +P+E G L L+ L + N L
Sbjct: 204 KNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGNPL 262
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 566 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNLQTLALNENSLTSLPDS 745
LDL + ++ ++ + L E Y+ N L LP E G L NL L + NS+ ++P
Sbjct: 163 LDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPE 222
Query: 746 LANLKSLK 769
L L L+
Sbjct: 223 LGLLTELR 230
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 42.7 bits (96), Expect = 6e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 518 DVIKEFIR--CREEGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLS 691
+V++EF CR E + LD+S++ I LP + L +L + N+L LP+ +
Sbjct: 85 NVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMP 144
Query: 692 NLQTLALNENSLTSLPDSLAN 754
NL+ L + N + P +AN
Sbjct: 145 NLEILKIENNHIVFPPPHIAN 165
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 566 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNLQTLALNENSLTSLPDS 745
L++ + + P ++ L L + NK+ LP FG L NL+ L++++N L LP
Sbjct: 80 LNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTY 139
Query: 746 LANLKSLK 769
+A++ +L+
Sbjct: 140 IAHMPNLE 147
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 521 VIKEFIRCREEGVIRLDLSKSSITSLPPN--VRDLTHLVEFYLYGNKLVALPSEFGCLSN 694
+IKE E + LDLS ++ LP R + L N + ++ E +
Sbjct: 17 IIKEAEDAGPENALTLDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTR 76
Query: 695 LQTLALNENSLTSLPDSLANLKSLK 769
L+ L + N L P+SL L+SL+
Sbjct: 77 LRYLNIRSNVLREFPESLCRLESLE 101
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 551 EGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFG-CLSNLQTLALNENSL 727
+ ++ LDLS + +T +P + +L L L NK+ + + LS+LQ L L+ N L
Sbjct: 356 QSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHL 415
Query: 728 TSLPDSLANLKSLK 769
TSL L N+ SL+
Sbjct: 416 TSL-SGLENVPSLE 428
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 566 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLV-ALPSEFGCLSNLQTLALNENSLTSL 736
L+ S + ++ + + L L YL N L LP E G L NL+T+ L+ N++T++
Sbjct: 553 LNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNI 610
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 566 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNLQTLALNENSLTSLPDS 745
L + ++ + PN+ L HLV L+ N + P E +S+L+ + L+ N L +
Sbjct: 711 LSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLP 770
Query: 746 LANLKSL 766
+A K L
Sbjct: 771 VATSKKL 777
Score = 33.5 bits (73), Expect = 0.034
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +2
Query: 566 LDLSKSSITSLPP----NVRDLTHLVEFYLYGNKLVALPSEFGCLSNLQTLALNENSLTS 733
L+LS + +T +P N DL HL ++ GN+L L L+TL N N L+S
Sbjct: 835 LNLSYNYLTEIPSKFFQNFSDLKHL---FVSGNELANLSISSTAQVLLETLYANGNRLSS 891
Query: 734 LPDSLANLKSLK 769
P + A KSL+
Sbjct: 892 FPKNEALSKSLR 903
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 626 LVEFYLYGNKLVALPSEFGCLSNLQTLALNENSLTSLPDSLANLKSL 766
L Y GN+L + P +L+ L ++ N+L +L A KSL
Sbjct: 879 LETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSL 925
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -2
Query: 188 LFSSINWCFTIKVRGNCDNLK---YNLHSKIKVNDINQFSQN 72
L++ WC ++ N DNL+ YN H K+ N+INQ ++
Sbjct: 788 LYTQEAWCK--EMMENLDNLRTGPYNFHDKVFENEINQLIES 827
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = -1
Query: 465 DSGCLTVTTLGRAPSVVVIDAADNFFSLIV*YFSLGLTVPTESKASEFSRDE--LSRFIP 292
D G ++ + G V+ A FSL++ Y ++ + K S D+ L ++ P
Sbjct: 8 DKGLISRSGFGSRHVRRVVKALALIFSLLILYLTISNVSDSPPKRDSLSLDDIVLQKYKP 67
Query: 291 DYTSITFLLCTRKYVTKTHLIRFTHLI 211
Y + ++ + + T L+++ LI
Sbjct: 68 SYKQVNWI--DSQGLKDTFLVKYGDLI 92
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 537 LDAVKKV*YDWISANHRLLLFRQMLEILHI 626
L + ++ D +S HR+L+F QM ++L I
Sbjct: 993 LQVLDRLLKDLVSNGHRVLIFTQMTKVLDI 1022
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 161 TIKVRGNCDNLKYNLHSKIKVNDINQFSQNDL 66
T+K N +N+K + +K+ +I +F DL
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDL 1197
>SPCP20C8.02c |||S. pombe specific UPF0321 family protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 9.1
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 40 LTFCSILICKSFCEN*L--ISLTFILECKLYLRLSQLPRTLIVKHQLMLLKSIDL 198
L FC IC F + L ++LTF+ KL ++L LI +H LML + D+
Sbjct: 3 LLFC---ICCVFIKLVLAEVNLTFVDYAKLPPNYAELLANLIDQHGLMLFDTADV 54
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 569 DLSKSSITSLPPNVRDLTHLVEFYLYG 649
D S +S+T LP +RD+ + F L G
Sbjct: 469 DTSLTSVTVLPRTIRDVFDRIRFVLNG 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,511
Number of Sequences: 5004
Number of extensions: 62791
Number of successful extensions: 195
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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