Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1534
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    38   1e-04
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    26   0.34 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
 Frame = +2

Query: 542 CREEGVIRLDLSKSSITSLPPN--VRDLTHLVEFYLYGNKLVALPSE-FGCLSNLQTLAL 712
           CR +  I LDLS++ IT L  N  + DL  L E +L  N +V +  +    L+ L+T   
Sbjct: 210 CRADIRI-LDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNA 268

Query: 713 NENSLTSLPDSL-ANLKSLK 769
           + NSL SLP+ L A+ + L+
Sbjct: 269 SYNSLDSLPEGLFASTRDLR 288



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = +2

Query: 566 LDLSKSSITSLPPNV-RDLTHLVEFYLYGNKLVAL-PSEFGCLSNLQTLALNENSLTSLP 739
           L+LS + + ++   +   L  L    L GN + ++ P  F   S+L+ L L+ N LTS+P
Sbjct: 388 LELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP 447

Query: 740 DSLANLKSLK 769
           D+L +L  LK
Sbjct: 448 DALRDLALLK 457



 Score = 26.2 bits (55), Expect = 0.34
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 566 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVAL-PSEFGCLSNLQTLALNENSLTSL 736
           LDLS + +TS+P  +RDL  L    L  N++       F  L  L  L L  N + +L
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNL 493


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 152 VRGNCDNLKYNLHSKIKVNDINQFSQNDLQINIEQN 45
           + GN    +  ++  +KV  + +FS N+L ++I  N
Sbjct: 87  IEGNTFKTETQVNDSLKVTRLYEFSDNELLVHISTN 122


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NLDNSSRENSEALDSVGTVSPREKYHTMREKKLSAASI 412
           N    + +   + D +  VSPR K H +R  +++ AS+
Sbjct: 543 NHQTGTAKMGPSYDPMAVVSPRLKVHGIRGLRVADASV 580


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 571 IQSYYTFFTASNEFFNNVKISLYWFVFLSC 482
           + S Y  F+A   FF  + + LY +  +SC
Sbjct: 194 MDSSYVIFSAMGSFFLPMLVMLYVYGRISC 223


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 710 MRVFVDWTNN-QILMEVQPAYSHTNKTL 630
           + V+ ++  N Q+  E+  +YS  NKTL
Sbjct: 643 LNVYPEFQENVQLCSEISESYSSNNKTL 670


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 90  NIINFYLRVQVVFEIITITS 149
           N++N Y+R ++V + I +TS
Sbjct: 56  NLLNAYVRFKLVTDCIFVTS 75


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 574 EIQSYYTFFTASNEF 530
           E QSY+   T SNEF
Sbjct: 103 EKQSYFHIATTSNEF 117


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 574 EIQSYYTFFTASNEF 530
           E QSY+   T SNEF
Sbjct: 103 EKQSYFHIATTSNEF 117


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 660 TSLFPYK*NSTKCVRSLTFGG 598
           TSLFPY   +   +R LT  G
Sbjct: 238 TSLFPYALLTILLIRGLTLPG 258


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 660 TSLFPYK*NSTKCVRSLTFGG 598
           TSLFPY   +   +R LT  G
Sbjct: 291 TSLFPYALLTILLIRGLTLPG 311


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 574 EIQSYYTFFTASNEF 530
           E QSY+   T SNEF
Sbjct: 42  EKQSYFHIATTSNEF 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,909
Number of Sequences: 438
Number of extensions: 4447
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)