Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1533
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   3.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   6.7  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    26   6.7  

>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 420 PYTAFSMTGPLTKQALNYLIT-SYFSVNIITKRCF 319
           PY A+S+ GP T  A N   T  +FS + I++  F
Sbjct: 47  PYRAYSILGPKTPTAFNSANTVRFFSFSSISRLVF 81


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 454 MLLPLPYKSLKSIHRVFYDGTAD 386
           +L+ LPY ++K+   VFY G  D
Sbjct: 834 LLMGLPYITMKNYRNVFYGGVKD 856


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 478  GHHADSSRMLLPLPYKSLKSIHRVFYDGT 392
            GH   ++R  L    KSL+S HR+   GT
Sbjct: 1496 GHVIKNARAKLTKAVKSLRSYHRLILSGT 1524


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 582 LNDNCCRDVVCLIQPYGSMWGSNPSSP 502
           L ++ C  V C+I+P  S  G N +SP
Sbjct: 256 LTNHHCPVVACIIEPIQSEGGDNHASP 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,445
Number of Sequences: 5004
Number of extensions: 57131
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)