Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1533
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716...    29   5.3  
03_05_1051 + 29978655-29979875                                         29   5.3  
01_06_1667 + 38994627-38995718                                         29   5.3  
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309...    28   7.0  
02_01_0503 + 3669758-3670059,3670351-3670870                           28   7.0  
01_06_0777 + 31919196-31919909,31919984-31920082                       28   7.0  

>06_01_0928 -
           7159857-7159922,7159923-7160024,7160126-7160206,
           7160289-7160384,7160462-7160566,7160648-7160722,
           7161372-7161431,7161960-7162090,7162175-7162250,
           7163390-7163459,7163603-7163664,7163788-7163871,
           7163973-7164047,7164448-7164585,7164733-7164791,
           7164910-7165123,7167996-7168091,7168701-7169639
          Length = 842

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 665 TGNNYYGIKKVRQTIIYSRPTRPDADEP*MTTVVEMLFASYNRMG 531
           TG  YY ++  R+  + S P+ PDA+ P     V  L A +   G
Sbjct: 133 TGGPYYPLRLGRKDGLSSSPSAPDAEIPHANLTVSRLVAVFAAKG 177


>03_05_1051 + 29978655-29979875
          Length = 406

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 470 VMPAGSCIRRGGEDGLDPHIDPYGCM 547
           +  AG   RR GE GL+P +  Y C+
Sbjct: 232 IYEAGRLFRRMGEKGLEPDVVTYNCL 257


>01_06_1667 + 38994627-38995718
          Length = 363

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 488 CIRRGGEDGLDPHIDPYGCMRQTTSLQQLSFK 583
           C++   EDG++P++D Y  + Q+  L+ L ++
Sbjct: 290 CLKEMKEDGMEPNMDEYNKLIQSLCLKALDWR 321


>03_04_0151 -
           17729023-17729372,17729441-17730623,17730723-17730953,
           17730975-17731036,17732085-17732157,17737044-17737834,
           17737932-17738004
          Length = 920

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -3

Query: 543 QPYGSMWGSNPSSPPRRMQLPAGITQTAHVCCCRYLTNPLSPYTAFSMTGPLTKQALNYL 364
           +P  S+  + P SPPR+   P G   +        + +P +P +  S TG   KQ     
Sbjct: 700 EPATSIIQTRPPSPPRKRLNPEGSKDSLRRPIETAMKSP-TPTSGNSSTGGAAKQEATTA 758

Query: 363 ITSYFSVNIITKR 325
            T   S  ++ K+
Sbjct: 759 STEAHSAKVVLKK 771


>02_01_0503 + 3669758-3670059,3670351-3670870
          Length = 273

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 553 LPHTTVWVDVGIQPVLASAPDAAARGHHADSSRML 449
           L H T+++ + +   +A A D  A  HH D+   L
Sbjct: 191 LEHATMYLHLAVYASVALATDGVASSHHGDAQAQL 225


>01_06_0777 + 31919196-31919909,31919984-31920082
          Length = 270

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 537 YGSMWGSNPSSPPRRMQLPAGIT-QTAHVCCCR 442
           +G  WG   + PPR   +PA ++ Q A V  CR
Sbjct: 95  WGCGWGPPAAEPPREPPVPAAVSPQAAAVEACR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,685,580
Number of Sequences: 37544
Number of extensions: 375241
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)