Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1533
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical p...    28   8.3  
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p...    28   8.3  
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.      28   8.3  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 674 YKTTGNNYYGIKKVRQTIIYSRPTRP 597
           Y+T  + Y+GIKK R  ++Y   T+P
Sbjct: 839 YETPEDAYFGIKKKRMYVVYQPATQP 864


>Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 582 LNDNCCRDVVCLIQPYGSMWGSNPSSPPRRMQLPAGITQTAHVC 451
           LND  C  + C++ P+ +     P SP R   +   +   A +C
Sbjct: 284 LNDCTCNTIRCILVPFSTEPFFPPVSPSRLKSINVALKLIADIC 327


>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 582 LNDNCCRDVVCLIQPYGSMWGSNPSSPPRRMQLPAGITQTAHVC 451
           LND  C  + C++ P+ +     P SP R   +   +   A +C
Sbjct: 284 LNDCTCNTIRCILVPFSTEPFFPPVSPSRLKSINVALKLIADIC 327


>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 582 LNDNCCRDVVCLIQPYGSMWGSNPSSPPRRMQLPAGITQTAHVC 451
           LND  C  + C++ P+ +     P SP R   +   +   A +C
Sbjct: 284 LNDCTCNTIRCILVPFSTEPFFPPVSPSRLKSINVALKLIADIC 327


>Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 582 LNDNCCRDVVCLIQPYGSMWGSNPSSPPRRMQLPAGITQTAHVC 451
           LND  C  + C++ P+ +     P SP R   +   +   A +C
Sbjct: 284 LNDCTCNTIRCILVPFSTEPFFPPVSPSRLKSINVALKLIADIC 327


>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 582 LNDNCCRDVVCLIQPYGSMWGSNPSSPPRRMQLPAGITQTAHVC 451
           LND  C  + C++ P+ +     P SP R   +   +   A +C
Sbjct: 284 LNDCTCNTIRCILVPFSTEPFFPPVSPSRLKSINVALKLIADIC 327


>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 582 LNDNCCRDVVCLIQPYGSMWGSNPSSPPRRMQLPAGITQTAHVC 451
           LND  C  + C++ P+ +     P SP R   +   +   A +C
Sbjct: 284 LNDCTCNTIRCILVPFSTEPFFPPVSPSRLKSINVALKLIADIC 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,194,668
Number of Sequences: 27780
Number of extensions: 326740
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)