Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1533
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   7.2  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 460 SCLRDARGQLHPARRRGRV 516
           SC R +RG   P+ +RG V
Sbjct: 15  SCTRPSRGNAVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 460 SCLRDARGQLHPARRRGRV 516
           SC R +RG   P+ +RG V
Sbjct: 15  SCTRPSRGNAVPSSQRGNV 33


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 680 RPYKTTGNNYYGIKKVRQTIIYSRPTRP 597
           R  KTT  N   IK     I+  +PT+P
Sbjct: 382 RTGKTTEENPKSIKSGDAAIVMLQPTKP 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,893
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)