Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1530
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   6.8  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.0  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 39  MCLHVFSLLLTVITFLINKNFRFDDLSLERIQKSYNN*RVKLTMLNV 179
           +CLHV+  LLT+I    +K  RF  ++       ++N  V++  LNV
Sbjct: 128 ICLHVYQGLLTIIPIFKSKK-RF--MTSHNNPSLHDNFSVRIQELNV 171


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 84  LINKNFRFDDLSLERIQKSYNN*RVKLTMLNV 179
           L+N   R   +S ERI  SY N  +K   LN+
Sbjct: 780 LVNPANRHRAVSTERINDSYENIELKPLKLNI 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,175
Number of Sequences: 5004
Number of extensions: 34304
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)