Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1530
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    27   8.0  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    27   8.0  

>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
           protein.
          Length = 77

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 362 CATNR*ITQYHANLFR*LLFLVYIFCFRISFFLFEV 255
           C T R  + Y  N F+ + F   IF      FLFE+
Sbjct: 35  CETRRCFSAYFLNFFQFIFFFFNIFQLFYVVFLFEI 70


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 110 IKSKILVYQKSNYSK**REDMKAHTCVKSSE 18
           IK++I     S +    +E++K HTC+K+ E
Sbjct: 556 IKARITKIGDSTFGDFIKEELKVHTCLKAQE 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,073
Number of Sequences: 27780
Number of extensions: 183534
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)