Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1529
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    62   6e-11
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    37   0.004
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    32   0.078
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    29   0.96 
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    27   2.2  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.9  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   5.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   5.1  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   6.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.9  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   8.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.9  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 37/119 (31%), Positives = 53/119 (44%)
 Frame = +3

Query: 204 VVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEVKTS 383
           V +V  VRTP       +A +   +L   A+ G L++  I    +D +  G V+      
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQ 65

Query: 384 NIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSDVP 560
           N  R+ AL AG        TV   C S  +A   G   I  G  +++VAGG E MS+ P
Sbjct: 66  NPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 438 HTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVE-FMSDVPIRHSRKMRSLLLRINRAK 614
           HT T AC +   AI      I  G  DVI+AGG E  ++ + +    K RSL  + N   
Sbjct: 164 HTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDNP 223

Query: 615 TPAQR 629
             A R
Sbjct: 224 KAASR 228


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 78  AKSLIKANHVRSTVKFDTARRALSVAPV---LQQKKSLPDRTGKNVVLVDGVRTPFLVSF 248
           +K+L+  +H+  TVK DT RR + V+ V   L Q     D + K+  L  G+   F  + 
Sbjct: 92  SKALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKS--LTSGIEYLFKKNK 149

Query: 249 TDYAR 263
            +YA+
Sbjct: 150 VEYAK 154


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = -3

Query: 235 NGVRTPSTSTTFLPVR--SGSDFFCCSTGATLSARLAVSNLTVDRT 104
           NGVR+P++S T  P+R  SG+ +   S+ +  SA+ +VS  +++ T
Sbjct: 475 NGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKSAQRSVSMSSLNNT 520


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
 Frame = -1

Query: 390 LYLKFSPLGSRCHIQ------CSQ*HPSIYQSFVGDQE 295
           +Y K  P G  C  +      C Q HP IYQ  VG+ E
Sbjct: 222 VYSKSEPKGMECLDKFQAMQACFQKHPEIYQDMVGESE 259


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +3

Query: 303 LLQKTGISKDVIDYIVYGTVIQE-----VKTSNIGREAALAAGFSDRTP--AHTVTMACI 461
           LL K  +S        Y TV  E     + T+   +EAA AAG ++ T   A +VT A  
Sbjct: 27  LLNKRDVSVVTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDAETTSSVAASVTPAAS 86

Query: 462 SSNQAITTGIGMIAAGA 512
           SS  A  T +   +  A
Sbjct: 87  SSVAASVTPVASSSVAA 103


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 522 IVAGGVEFMSDVPIRHSRKMRSLLLRINRAKTPAQRLSLIAFIRPDFFAPELPA-VAEFS 698
           +V  GV+  + +    S+    +   INR+K   Q  S  +   P   +P LP  + + +
Sbjct: 70  VVVPGVDHRTKLHSESSKNDSEITPDINRSKVNPQEYSEFSVASPQTISPSLPLNLDDET 129

Query: 699 SGETMGHS 722
             E + HS
Sbjct: 130 VSENVPHS 137


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 631 YRSLPSSDRTSSLPSCLPWRSSRRARP 711
           +RS+PSS +T   PS   +R S  A P
Sbjct: 312 FRSIPSSPKTEGAPSNAQFRPSLPATP 338


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +3

Query: 300  GLLQKTGISKDV-IDYIVYGTVIQE--VKTSNIGREAALAAGFSDRTPAHTVTMACISSN 470
            G+    G+ KD   D  V   ++QE  + T+N      L    S   P  T   AC ++ 
Sbjct: 1210 GMSALRGMYKDRWTDKPVQKDILQESFINTANAWINMLL---LSASGPIKTPVGACATAV 1266

Query: 471  QAITTGIGMIAAGAYDVIVAGGVEFMSD 554
            +++   + +I +G   + ++GG +  S+
Sbjct: 1267 ESVDAAVDLITSGKARICISGGYDDFSE 1294


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 154 RQYCSRRNHSQTVQARMWCL-SMESALHSLFHSPIM 258
           R YC   N S  +  ++WC+ +++   H +   P M
Sbjct: 664 RAYCIIPNFSFAIAFKIWCMFALDPKSHYMIEDPYM 699


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 274 WGIILA*SVNETRNGVRTPSTSTTFLPVRSGSDFFCCSTGATLSA 140
           WG  +A S+NE  +     + +T F+  ++ SD  C    +T+ +
Sbjct: 184 WGTYIAHSLNEISSNTTGAANATLFIDTQTKSD--CYKLASTIES 226


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 330 PSIYQSFVGDQEVHVLLVHGASSW 259
           P +++  +GD+ VH   +H   +W
Sbjct: 359 PQLFRDLLGDERVHRAAMHWIKAW 382


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +3

Query: 336 IDYIVYGTVIQEVKTSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMI 500
           +D +V  +++   KTS +   A+    ++       V   CIS+N  +   +G +
Sbjct: 589 VDVMVAASIVHHAKTSLMHSAASSTPSYNGERIVPDVPSPCISTNPNLPALVGSL 643


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 403 PWRLGSATGLQRTPSPWLAFLLTRQSPLVSV*SRPARMTSSWRAEWSSCRTCPS-ATPAR 579
           PW   +++     P+PW      + +P +S+   P+ +   W+         PS   P++
Sbjct: 425 PWAKPASSAAPSNPAPWQQPAAPQSAPALSM--NPSSL-PPWQQPTQQSAVQPSNLVPSQ 481

Query: 580 CALCCCGSTAPRP 618
            A    G++AP P
Sbjct: 482 NAPFIPGTSAPLP 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,830
Number of Sequences: 5004
Number of extensions: 66967
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)