Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1529
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 221 6e-58
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 55 6e-08
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 53 2e-07
U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transpor... 29 4.8
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 28 6.3
D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA... 28 6.3
AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical ... 28 6.3
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 221 bits (539), Expect = 6e-58
Identities = 116/215 (53%), Positives = 152/215 (70%)
Frame = +3
Query: 114 TVKFDTARRALSVAPVLQQKKSLPDRTGKNVVLVDGVRTPFLVSFTDYARMMPHELARHA 293
+ F TAR A +VA KK++P N+VLVD VRTPF+VS T + +M +L + A
Sbjct: 6 STSFGTARAASAVA-----KKNMP-----NIVLVDAVRTPFVVSGTVFKDLMAVDLQKEA 55
Query: 294 LLGLLQKTGISKDVIDYIVYGTVIQEVKTSNIGREAALAAGFSDRTPAHTVTMACISSNQ 473
+ L++KT + + +D+I+ GTVIQE KTSNI REAAL AG D+ PAHTVT+ACISSN
Sbjct: 56 IKALVEKTKLPYEQLDHIICGTVIQECKTSNIAREAALLAGVPDKIPAHTVTLACISSNV 115
Query: 474 AITTGIGMIAAGAYDVIVAGGVEFMSDVPIRHSRKMRSLLLRINRAKTPAQRLSLIAFIR 653
A+TTG+GM+A G + I+AGGVE +SDVPIR++R R +L +N+AK +L + I
Sbjct: 116 AMTTGMGMLATGNANAIIAGGVELLSDVPIRYNRNARKAMLGMNKAKDVPSKLKIGGQIV 175
Query: 654 PDFFAPELPAVAEFSSGETMGHSADRLAAAFGASR 758
+ +PELPAVAEFS+GETMGHS DRLAAAF SR
Sbjct: 176 KNLLSPELPAVAEFSTGETMGHSGDRLAAAFNVSR 210
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/123 (29%), Positives = 51/123 (41%)
Frame = +3
Query: 192 TGKNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQE 371
+ K+ +V RTP + + + ELA A+ L++ + I + G V Q
Sbjct: 20 SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQA 79
Query: 372 VKTSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 551
R+AAL AG TV C S +AI I G D + GG+E MS
Sbjct: 80 NAGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGMESMS 139
Query: 552 DVP 560
VP
Sbjct: 140 QVP 142
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = +3
Query: 195 GKNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEV 374
GK V +V RT F + +L A L+ + D +D++++G V+
Sbjct: 3 GKCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASS 62
Query: 375 KTS-NIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 551
+ + R L +G A TV C S QA+ I G ++++AGG E MS
Sbjct: 63 RDGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGGTENMS 122
Query: 552 DVP 560
VP
Sbjct: 123 MVP 125
>U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical
protein C29H12.6 protein.
Length = 316
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 619 RRRGYRSLPSSDRTSSLPSCLPWRSSRRARPWATA 723
RRR + P R +S PS +P S R A+P A
Sbjct: 23 RRRNHSRQPDERRKASSPSVVPMSSKRIAQPMRAA 57
>AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transporter
(pgp related)protein 4 protein.
Length = 787
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 195 GKNVVLVDGVRTPFLVSFTDYARMMPHELAR--HALLGLLQKTGISKDVIDYI 347
G ++VL ++ LVSF Y + L + GL+Q G S+ V +YI
Sbjct: 425 GGHLVLTQKMKGDLLVSFLLYQMQLGDNLRQMGEVWTGLMQSVGASRKVFEYI 477
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 563 PPLPQDALSAAADQPRQDPGAEAIAHCLHPTGLLRSRAACRGG 691
PP P DA A A +P P EA+ G + AA GG
Sbjct: 40 PPPPADAAPAPAPEPAPAPAPEAVPAPAADAGGYAAAAAPAGG 82
>D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA
thiolase protein.
Length = 412
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 390 GREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 551
G+ A G + P V AC S + + G +I +G DV++ G E M+
Sbjct: 66 GQRALYEVGLTG-IPIFNVNNACASGSSGLFLGKQIIESGNSDVVLCAGFERMA 118
>AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical
protein Y57A10C.6 protein.
Length = 412
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 390 GREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 551
G+ A G + P V AC S + + G +I +G DV++ G E M+
Sbjct: 66 GQRALYEVGLTG-IPIFNVNNACASGSSGLFLGKQIIESGNSDVVLCAGFERMA 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,782,961
Number of Sequences: 27780
Number of extensions: 398816
Number of successful extensions: 1227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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