Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1528
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 31 0.48
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 30 1.1
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 30 1.1
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403... 30 1.5
08_02_1234 + 25437340-25437502,25437983-25438381,25441198-254416... 29 2.6
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 29 2.6
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 28 4.5
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 28 6.0
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 28 6.0
03_03_0276 - 16113073-16113279,16114766-16114873 28 6.0
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457... 28 6.0
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 28 6.0
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853... 28 6.0
11_04_0380 - 16994112-16994359,16998263-16998386 27 7.9
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 27 7.9
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 27 7.9
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 148 VAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVE 303
V EE R K+D + SSK+ E+ +S DE ++K + +S+S+ E
Sbjct: 152 VKEEAEGGGDREDKSDEEESESSKEESSEASSSSDEEEDKRESSEASSSSDE 203
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 172 RIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 318
R RT++ D + S + +Q ES +I++ KE DH A + E+L +K
Sbjct: 993 RRRTMRRDTKLLKSGRKSQQESTVNIEQRKEIDH--AGLEKSNELLREK 1039
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 136 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNA-----SSASTV 300
Q + A++ E + V DVN++ DES ++++ N++ D SA TV
Sbjct: 504 QKDGYADDDTTELENSPALSVEDVNANMPVDDESADTVEVNRDLSADTMKLTRDQSAETV 563
Query: 301 EVLDDK 318
+V +D+
Sbjct: 564 KVNNDQ 569
>02_01_0548 +
4035265-4035431,4035517-4035651,4035859-4036081,
4036282-4036468,4036627-4036811,4037435-4037572,
4037995-4038123
Length = 387
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 124 VKITQSEPVAEETNNERIRTLKTDVSDVN-----SSKDAQDESRNSIDENKEKDHDNASS 288
V + S E I+ L VSDVN SS D E +D +++KD +++S
Sbjct: 113 VAVVASSAAWVEKYRHEIQFLVNKVSDVNHIKWRSSTDILKEE--GLDVSEQKDPESSSH 170
Query: 289 ASTVEVLDD 315
TVEV+++
Sbjct: 171 CGTVEVMEN 179
>08_02_1234 +
25437340-25437502,25437983-25438381,25441198-25441615,
25442353-25442542
Length = 389
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 154 EETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEK 267
EE + +RTL V D N + D++RN+ +N+ K
Sbjct: 332 EENRKDCLRTLYAVVEDANKANKLADDARNAYVKNRLK 369
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 151 AEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 315
AE+TN + K D D NS + + +S +D+N+ D+ + +LDD
Sbjct: 539 AEDTNKVTNKKQKLDDGDKNSDSEYESDSAQHLDDNEVHKIDDVQIGTA--LLDD 591
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 118 KRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 285
K+ K + + N++ + T + V D+ S D +DE D+N E D D+ S
Sbjct: 676 KKTKTPKEKSKKRAHNHDDVATEEDIVEDLILSSDEEDEDE---DKNMESDEDDGS 728
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 163 NNERIRTLKTDVSDVNSS-KDAQDESRNSIDENKEKDH 273
N +R+RTLK+D++ + + + +DE + +D+N++ H
Sbjct: 259 NLDRVRTLKSDLTRLLAHVQKVRDEIEHLLDDNEDMAH 296
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 127 KITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDH--DNASSASTV 300
++T++ V N+ T KTD S SS + + E S+ + +DH D A +A+ V
Sbjct: 275 RVTETPIVKPNDNDVEEHTDKTDESIFVSSTEVKQEETVSLFDGSSEDHQEDCAETAAAV 334
>03_03_0276 - 16113073-16113279,16114766-16114873
Length = 104
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 154 EETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEV 306
EE++ E+ + + V +D DE+ N D+ D D S +EV
Sbjct: 40 EESSAEQYAQSEEEEEGVEVDQDEGDENDNGSDDGNNDDEDEEESDDEMEV 90
>01_06_0560 +
30244814-30244871,30244979-30245140,30245725-30245786,
30246170-30246214,30246358-30246363,30246424-30246624,
30246735-30248024
Length = 607
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 247 IDENKEKDHDNASSASTVEVLDDK*SVLKMWMCSKNLFSNFKDPKIILINFFAHIFERNL 426
+DEN ++ H++ + AST V D + L+ + + + F K+ L+ +A+I ++
Sbjct: 469 LDENFQEIHEDRAQASTSGVNDRNSAELEQKLSAASEELEFLRSKLTLMERYANILHISI 528
Query: 427 F 429
F
Sbjct: 529 F 529
>01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 154 EETNNERIRTLKTDVSDVNSSKDAQD--ESRNSIDENKEKDHDNA 282
E N R + +VN + D Q ES ++ +EKDH NA
Sbjct: 1173 ERQGNPRRCAFTLWIDNVNPTYDGQKITESETQVEYQREKDHQNA 1217
>01_01_0014 +
84379-84600,84737-84830,84935-85086,85212-85299,
85348-86681,87291-87398,87500-87583
Length = 693
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 240 SRFILSILA*IHVRNVSF*CSNPFIVRLLSHRLTLSYFNSFTFNIAHFTKLLR 82
SRF+ + + R + F N + + LSH + LS F+ T H TK+ R
Sbjct: 164 SRFVHHPSSFSYKRMLPFVTENGYHIANLSHHVLLSTFSEITSQEGHRTKIPR 216
>11_04_0380 - 16994112-16994359,16998263-16998386
Length = 123
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 VAEETNNERIRT-LKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 318
+ +E NN+ + + D D+ + KD + + +SI + + D D+ S ++ DD+
Sbjct: 53 LGQELNNDPEQVAISRDTEDICNDKDLKLLNGSSIQDEDDDDEDDESYCTSSSAEDDE 110
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/74 (20%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 94 CKMGNIKCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDA-QDESRNSIDENKEKD 270
CK N+K + K+T+SE T+++ I+ ++ + N + + +D + ++ +
Sbjct: 903 CKDQNLKETKSKLTKSEEPFAMTDSKSIKVAHSNQTSRNLNNELFEDSTPFAVKSGMSEP 962
Query: 271 HDNASSASTVEVLD 312
+N SS +++ +
Sbjct: 963 PENRSSEQALDLAE 976
>01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 286 CSHCRDLFLCSRLYYFEIH----PEHPCLNSRQKRQF 188
C+ C++ FLC R Y E++ HP ++QK F
Sbjct: 965 CTSCKNFFLCERCYAEELNTPLKDRHPA-TTKQKHAF 1000
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,741
Number of Sequences: 37544
Number of extensions: 210974
Number of successful extensions: 603
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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