Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1527
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    35   0.012
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    33   0.049
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    30   0.35 
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.46 
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.80 
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    28   1.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   1.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   1.8  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.6  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   5.6  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   7.5  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC607.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 27/119 (22%), Positives = 44/119 (36%)
 Frame = +3

Query: 249 ACVCAFFASGVQNCIMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFG 428
           AC+CA F S     I S  +P    +  +    A L    ++ G  +    W  + ++FG
Sbjct: 83  ACLCAGFGSS----IFSGAVPEVMVKFHVCRTVALLGISLYVLGFASGPVVWAPMCELFG 138

Query: 429 RKSXXXXXXXXXXXXXXXQSTVPDYRLLLAARTINGFIIGGPATLVFTYLSDLVGVKKR 605
           R+                 +T  D + ++  R   GF    P T V    SD+   + R
Sbjct: 139 RRRPMIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFFGSSPITTVAGSFSDMFSARTR 197


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 25/91 (27%), Positives = 38/91 (41%)
 Frame = +3

Query: 366 AFMSGGVASAFFWGIVGDVFGRKSXXXXXXXXXXXXXXXQSTVPDYRLLLAARTINGFII 545
           A+M    A    +G   D++GRK                  T      L+AAR I G   
Sbjct: 132 AYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAIAGIGG 191

Query: 546 GGPATLVFTYLSDLVGVKKRQFYLTMVGMSF 638
           GG  + V   +SD+V +K+R  Y  ++ + F
Sbjct: 192 GGMNSTVSILMSDIVPLKQRGTYQGIINVFF 222


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 351 GLINMAFMSGGVASAFFWGIVGDVFGRK 434
           GL+N A   G V     +G +GD FGRK
Sbjct: 91  GLVNAAANIGNVFGQILFGFMGDFFGRK 118


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 351 GLINMAFMSGGVASAFFWGIVGDVFGRK 434
           GL+N A   G +     +G +GD FGRK
Sbjct: 96  GLVNAASNIGNIFGQLMFGFMGDFFGRK 123


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 351 GLINMAFMSGGVASAFFWGIVGDVFGRK 434
           G++N A   G +     +G +GD FGRK
Sbjct: 86  GVVNAATNIGNIMGQLLFGFLGDFFGRK 113


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 351 GLINMAFMSGGVASAFFWGIVGDVFGRK 434
           GL+N +   G +     +G +GD FGRK
Sbjct: 96  GLVNASANIGNIFGQLLFGFMGDFFGRK 123


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 496 GTVLWAKV-IAASRSNVKLRVLFLPKTSPTIPQKNALATPPLIKAMLINPAWY 341
           G +L++ V IAA R +VK     L  +S  I  ++ LAT  L+ A+ + P  Y
Sbjct: 407 GAILFSPVFIAAHRISVKKAAAALKASSVKIQGRDILATWKLLVALGMTPILY 459


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 457 SNVKLRVLFLPKT-SPTIPQKNALATPPLIKAMLINPAWYVVSCSSHLA 314
           S+ KL    LPKT +  IPQ NAL T P      I+ +  + S   H++
Sbjct: 32  SSEKLNRASLPKTQNSAIPQSNALNTTPNESTSQIDSSPKIPSAVPHIS 80


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 556 LHWSSRIYQT*LELRRDNS 612
           +HW+S +YQ  L L+ +NS
Sbjct: 381 VHWNSTVYQELLNLKSNNS 399


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = +2

Query: 365 GFYERWCRQCILLGYSGRCLRQEEHPKLDVAPGCSDNFSPKHRSRLQTSAGS*NHQWVHY 544
           G+   W +Q  +  Y GR +   ++P+    PG         RS +Q   G      ++ 
Sbjct: 78  GYAYSWGQQ--IRNYLGRVVNTNQYPR--DRPGALTGKDV--RSTIQVQVGGYGMYLLNE 131

Query: 545 RRSSY-TGLHVFIRPSWS*E-ETILSYHGGNEFCCGL 649
             + Y TG+   + P    + E I+  H G EFC  L
Sbjct: 132 NGNLYVTGVPNNVGPELMRDLEPIVKIHAGREFCLAL 168


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 180 LRWHLVRLPCLCE 142
           L W +V LPCLCE
Sbjct: 598 LEWPVVFLPCLCE 610


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +3

Query: 381 GVASAFFWGIVGDVFGRK---SXXXXXXXXXXXXXXXQSTVPDY-RLLLAARTINGFIIG 548
           G+ S  ++G +GD++GR+                   QS  P +   +L A  + G + G
Sbjct: 200 GLFSTAYYGTMGDIYGRRLVLFITVSFLLLGDLWLLYQSYAPKHPYFVLFAAALKG-LGG 258

Query: 549 GPATLVFTYLSDLVGVKKRQFYLTMVGMSFVA 644
             +T+V +  S +    K +F    +G++F A
Sbjct: 259 YISTVVASQNSFVADCSKTEFRAWYLGLNFAA 290


>SPAC607.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -2

Query: 571 VKTSVAGPPIMNPLMVLAASRSL*SGTVLWAKVIAASRSNVKLRVLFLPKTSPTIPQKNA 392
           VK+S     + NP    A   +L +  +   +V  A  + +     F+  TS T+P  N 
Sbjct: 44  VKSSQTWNFLKNPFSNSAKFEALDADDMWDTRVEEAELNTIPSASPFIDHTSETVPFVNT 103

Query: 391 LATPPLIKA 365
            A PP + +
Sbjct: 104 EAPPPRLSS 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,951
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)