Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1527
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    29   0.040
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    29   0.040
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    29   0.040
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.5  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 0.040
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 150 GMATSLDATEEMADYETALDKAGYGRFSRSALGACVCAFFASGVQNCIMSYVLPAARCEL 329
           G+ T L  T  M+    AL K  Y +     LG C    FAS ++   + Y+  A R ++
Sbjct: 256 GVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM--AKRIQM 313

Query: 330 QLTTYQ 347
           +   +Q
Sbjct: 314 RKNRFQ 319


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 0.040
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 150 GMATSLDATEEMADYETALDKAGYGRFSRSALGACVCAFFASGVQNCIMSYVLPAARCEL 329
           G+ T L  T  M+    AL K  Y +     LG C    FAS ++   + Y+  A R ++
Sbjct: 256 GVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM--AKRIQM 313

Query: 330 QLTTYQ 347
           +   +Q
Sbjct: 314 RKNRFQ 319


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 0.040
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 150 GMATSLDATEEMADYETALDKAGYGRFSRSALGACVCAFFASGVQNCIMSYVLPAARCEL 329
           G+ T L  T  M+    AL K  Y +     LG C    FAS ++   + Y+  A R ++
Sbjct: 195 GVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM--AKRIQM 252

Query: 330 QLTTYQ 347
           +   +Q
Sbjct: 253 RKNRFQ 258


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 431 PAEDIAHYTPEECTGDTTAHKSHVDQ 354
           P  D +    E+C+G  +AHK  +D+
Sbjct: 111 PYPDWSFAKYEDCSGIVSAHKIAIDE 136


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 274 QECRTALCLTSCRRPD 321
           QECR   CLT   RP+
Sbjct: 240 QECRLKKCLTVGMRPE 255


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 274 QECRTALCLTSCRRPD 321
           QECR   CLT   RP+
Sbjct: 37  QECRLKKCLTVGMRPE 52


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 597 KKRQFYLTMVGMSFV 641
           KKR F++TM  + F+
Sbjct: 378 KKRNFFITMFDLDFL 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,684
Number of Sequences: 438
Number of extensions: 3901
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)