Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1526
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0905 + 25843547-25844314 31 0.44
05_01_0488 - 4070506-4072277,4072455-4072557 31 0.44
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186... 30 1.3
02_01_0302 - 2021221-2023305 29 1.8
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 29 2.3
11_06_0289 - 21969248-21973516 29 3.1
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 27 7.2
01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684 27 7.2
05_05_0345 - 24237991-24238868,24238956-24239307 27 9.5
01_05_0593 + 23494515-23494706,23495819-23495936,23496302-234963... 27 9.5
>06_03_0905 + 25843547-25844314
Length = 255
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 310 PVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVH-TASLYHATP 164
PV + P V + PVV P+ + P V + P+V PV + T + + TP
Sbjct: 100 PVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPVTYPTP 149
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 319 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 194
+ P + + PVV PV + P + + PVV P+ + P V
Sbjct: 103 YPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPV 144
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 118 LVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQ 297
L + R +L EE + C SEL E E ++ S++ S + L+E++ +
Sbjct: 185 LEDELHEVRGKLDASEE-KNMRCHCNFGANSELSEHEEKQQVSDVETSSLQKDLDEVKSE 243
Query: 298 SEALE 312
EALE
Sbjct: 244 KEALE 248
>07_01_0250 -
1864990-1865005,1865429-1865502,1865588-1865659,
1865854-1865920,1866365-1866429,1866812-1866843,
1867250-1867326,1867445-1867646,1867733-1867859
Length = 243
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 307 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 194
VLH A V T VV + ++HS V+ +V SG VV
Sbjct: 60 VLHRAASVDPTAVVEAGAVVHSGAVLGKDVVVGSGAVV 97
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 316 SAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAP 218
+ P HS P H+TP S P +AP HS P
Sbjct: 502 TTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPP 534
>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -2
Query: 313 APVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGP 200
AP+ P+V TP+V P+ +AP P
Sbjct: 1141 APMAQDTPMVQGTPMVQGTPMAEGTTGAQAAPTAQGAP 1178
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +1
Query: 124 QRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQSE 303
++ ++ E+ V+EE + G+R E ER + E + R +G E + Q +
Sbjct: 419 EKTKKLNEQTGVEEETAVRQGGGGEREEDEKDERGDGEEEGKEERRDMEKGGEERKEQQQ 478
Query: 304 ALEQSESQGQ 333
E+ E +G+
Sbjct: 479 --EEQEKEGR 486
>02_05_0877 +
32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 202 GRSELGERSEPRERSELGERSEPQGLNEL-----QGQSEALEQSESQG 330
G E E ERSE E+S QG++E+ G E EQS QG
Sbjct: 155 GGEERVSNKEHSERSERSEQSVEQGIHEVIVRQFVGNKERGEQSVEQG 202
>01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684
Length = 322
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 202 GRSELGERSEPRERSELGERSEPQGLNELQGQSEALEQSE 321
GRSE+ E L SEP + E QS+ LE+ E
Sbjct: 85 GRSEVVPEVEIIHEEPLHVESEPDSIAESSSQSQELEEEE 124
>05_05_0345 - 24237991-24238868,24238956-24239307
Length = 409
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 172 RGTETLCGQRGRSELGERSEPRERSEL 252
RG + + G R R +GE PR ++EL
Sbjct: 197 RGGQRIIGSRSRDGVGEDQPPRSQAEL 223
>01_05_0593 +
23494515-23494706,23495819-23495936,23496302-23496384,
23496468-23496524,23497004-23497112,23497230-23497282,
23497644-23497724,23497815-23497931
Length = 269
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 148 ELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQ 297
+++ QE++R T+T G RSE + P +E R G ELQ +
Sbjct: 7 QVNRQEDYRSTDTEAGAAARSEGYNKRRPETTTEKSGRRGTAGA-ELQSR 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,874,372
Number of Sequences: 37544
Number of extensions: 157143
Number of successful extensions: 633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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