Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1526
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 31 0.69
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 1.6
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 2.8
Z50857-5|CAJ43436.1| 719|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z50857-4|CAC42283.1| 694|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z50857-3|CAC42284.1| 753|Caenorhabditis elegans Hypothetical pr... 27 6.5
M77697-9|AAA27904.1| 407|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF136239-1|AAD34463.1| 694|Caenorhabditis elegans DAF-12 A2 pro... 27 6.5
AF136238-1|AAD34462.1| 753|Caenorhabditis elegans DAF-12 A1 pro... 27 6.5
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 193 GQRGRSELGERSEPRERSELGERSEP--QGLNELQGQSEAL 309
G+ GR+ +G + P E+ E GER EP +GL G + L
Sbjct: 285 GEPGRTIIGPQGPPGEKGERGERGEPGDRGLPGAAGAANLL 325
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 124 QRVRRAREELSVQEEWRGTETLCGQRGRSELG--ERSEPRERSELGERSE 267
Q +++ R+EL+ +EE R E QR R EL E E RER E
Sbjct: 616 QALKKTRQELAKEEEDRKKEAEVAQRVRDELRYIETQERRERERAKRNPE 665
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 307 VLHSAPV-VHSTPVVHSAPLIHSAP 236
V S PV +H TP V S PL HSAP
Sbjct: 154 VQQSPPVPIHPTPPVSSTPLRHSAP 178
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 307 VLHSAPV-VHSTPVVHSAPLIHSAP 236
V S PV +H TP V S PL HSAP
Sbjct: 154 VQQSPPVPIHPTPPVSSTPLRHSAP 178
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +1
Query: 73 GFSKILFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSEL 252
GF K+L R+C LV V +++ E TET R R++L E E E +
Sbjct: 1458 GFDKVLDEWRRKCEALVAEVEQSQRETRA----AATETF---RLRNQLEESGEQTEAVKR 1510
Query: 253 GERSEPQGLNELQGQ 297
++ Q L ++ Q
Sbjct: 1511 ENKALAQELKDIADQ 1525
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 163 EEWRGTETLCGQRGRSELGERSEPRERSELGERSE-PQGLNELQGQSEALEQSESQG 330
+ WRG QRG ++ E E E E ERS+ P +E G E + + G
Sbjct: 2368 DHWRGNSV---QRGAGQVAEEEEGSETYEERERSDSPSESSEHAGDEEVRDDAVETG 2421
>Z50857-5|CAJ43436.1| 719|Caenorhabditis elegans Hypothetical
protein F11A1.3d protein.
Length = 719
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 151 LSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNE 285
+ +++EW E +R S L +RS+ G + PQG N+
Sbjct: 147 VGMKKEWILNEEQLRRRKNSRLNNTGTCNKRSQPGNQQSPQGPNQ 191
>Z50857-4|CAC42283.1| 694|Caenorhabditis elegans Hypothetical
protein F11A1.3b protein.
Length = 694
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 151 LSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNE 285
+ +++EW E +R S L +RS+ G + PQG N+
Sbjct: 122 VGMKKEWILNEEQLRRRKNSRLNNTGTCNKRSQPGNQQSPQGPNQ 166
>Z50857-3|CAC42284.1| 753|Caenorhabditis elegans Hypothetical
protein F11A1.3a protein.
Length = 753
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 151 LSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNE 285
+ +++EW E +R S L +RS+ G + PQG N+
Sbjct: 181 VGMKKEWILNEEQLRRRKNSRLNNTGTCNKRSQPGNQQSPQGPNQ 225
>M77697-9|AAA27904.1| 407|Caenorhabditis elegans Hypothetical
protein B0303.14 protein.
Length = 407
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 202 GRSELGERSEPRERSELGERSE-PQGLNE 285
GR E R+E ERSE +RSE PQ N+
Sbjct: 88 GRQEEAPRAEKSERSERPQRSEKPQDQNQ 116
>AF136239-1|AAD34463.1| 694|Caenorhabditis elegans DAF-12 A2
protein.
Length = 694
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 151 LSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNE 285
+ +++EW E +R S L +RS+ G + PQG N+
Sbjct: 122 VGMKKEWILNEEQLRRRKNSRLNNTGTCNKRSQPGNQQSPQGPNQ 166
>AF136238-1|AAD34462.1| 753|Caenorhabditis elegans DAF-12 A1
protein.
Length = 753
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 151 LSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNE 285
+ +++EW E +R S L +RS+ G + PQG N+
Sbjct: 181 VGMKKEWILNEEQLRRRKNSRLNNTGTCNKRSQPGNQQSPQGPNQ 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,176,027
Number of Sequences: 27780
Number of extensions: 125867
Number of successful extensions: 444
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -