Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1526
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 286 VHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 164
           V+STP  H   + H    +H+ P  H      T    H+TP
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAA-TPHHQHSTP 447


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 159 YTQLLSCTPYTLHQHTTSPLIIE*NFRESN-ICNL 58
           +  ++SC+P T+H  T    II+ + R S+ IC++
Sbjct: 358 FCNIVSCSPQTVHPET----IIDVSRRRSSLICDV 388


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 217 GERSEPRERSELGERSEPQGLNEL 288
           G   +P+E+  L   + PQG N L
Sbjct: 33  GSAEQPKEQEPLPPVTPPQGENML 56


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 281 MNYRGRVKHWSRVNHRGRMDYWSGMSCGDGVD 376
           MN   R+   +RVN   RMD    M   D +D
Sbjct: 369 MNRMHRMNRVNRVNRMDRMDRIDRMDRMDRMD 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,013
Number of Sequences: 438
Number of extensions: 1629
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)