Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1523
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    42   7e-05
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        41   2e-04
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    40   3e-04
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    38   0.001
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    37   0.003
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    37   0.004
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    35   0.014
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    34   0.019
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    31   0.17 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   5.0  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    26   5.0  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    26   5.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.6  
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    25   8.7  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 378 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKN-LAGWSPLAEAISYGDRQTISTLV 548
           D   NTALH AV   R ECV++LL   A    ++ L  W+PL  A + G  + +S LV
Sbjct: 364 DASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLASATGLSEIVSILV 421


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +3

Query: 366 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTISTL 545
           + +KD  G T LH A  +G+ + V+ L++  AP+   +  G++PL  A++ G       L
Sbjct: 134 IRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVEL 193

Query: 546 VRKLKQQAREQME 584
           VR      R+  E
Sbjct: 194 VRAGADTLRKDSE 206



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 339 LSSLLRNNEV--TRKDKHGNTALHLAVMLGRKECVQLLLAHSAP--VKVKNLAGWSPLAE 506
           +  L+  ++V  T   + G T LH A   GR   VQ LL   AP  ++ K+L G +PL  
Sbjct: 89  IEELINRSDVDPTITTRGGQTCLHYAAGKGRLSIVQ-LLCDKAPELIRKKDLQGQTPLHR 147

Query: 507 AISYGDRQTISTLV 548
           A + G  Q +  L+
Sbjct: 148 AAAVGKIQVVKYLI 161


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +3

Query: 321 IGDVRKLSSLLRNNEVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPL 500
           I  V+K+   L    +  +++ GNTA+H A + G  E  +LLL       +KN+   SP+
Sbjct: 49  IAVVQKIIPYLNKEVINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPI 108

Query: 501 AEA 509
            EA
Sbjct: 109 YEA 111



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 363 EVTRKDKHGNTALHLAVMLGRKECVQLLLAH 455
           E++R+D++GN+ LH+A   G    VQ ++ +
Sbjct: 28  ELSRRDENGNSGLHMASANGHIAVVQKIIPY 58


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 360 NEVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWS 494
           N +  +DK+G+TAL++A  +G K  V++L+   A   + N AG S
Sbjct: 475 NYLNHQDKNGDTALNIAARIGNKNIVEVLMQAGASAYIPNRAGLS 519


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 309 ECIFIGDVRKLSSLLRNNEVTRKDKHGNTALHLAVMLGRKECVQLLLAH 455
           +C  +  V+ + S+  + +V   DK+ NT LHLA M GR++ V+ LL H
Sbjct: 64  QCANVQMVKHILSVF-DVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 366 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSA-PVKVKN-LAGWSPLAEAISYGDRQTIS 539
           + +KD++G T LH+AV   +   V+ LL H    V V++  +G++ L  AI  G+ +  S
Sbjct: 45  INQKDRYGRTVLHIAVSENKNSFVRSLLQHKGIDVFVQDEESGYTALHRAIYVGNLEAAS 104

Query: 540 TLVRK 554
            L+ K
Sbjct: 105 LLLSK 109


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 378 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTISTLVRKL 557
           D  G+T+LH A  +G  E ++LLL  +A + V N    +PL  ++ + +     T  + L
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304

Query: 558 K 560
           +
Sbjct: 305 E 305



 Score = 29.5 bits (63), Expect = 0.53
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 366 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKN 479
           V  +D +G+T+L +A   G  +CV  LL+++A   + N
Sbjct: 362 VNLQDSNGDTSLLIAARNGAMDCVNSLLSYNANPSIPN 399


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 366 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSP 497
           +  +D HG+TAL +    G K+C +LLL+  A   + N  G  P
Sbjct: 351 INLQDDHGDTALLICARNGAKKCARLLLSFYASSSIPNNQGQYP 394



 Score = 29.5 bits (63), Expect = 0.53
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 378 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTIST--LVR 551
           D+ G+TALH A  +G  E +  LL   A V   N    + L   + +     + T  +V 
Sbjct: 234 DEDGHTALHWAAAMGNLEMMHALLQAGANVVAVNYLQQTSLMRCVMFTMNYDLQTFEVVS 293

Query: 552 KLKQQA 569
           +L Q A
Sbjct: 294 ELLQSA 299


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 300 PLHECIFIGDVRKLSSLLRNN-EVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVK 476
           P+H     G V+ +  L+++  +   KDK G   LHLAV       V  LL     V ++
Sbjct: 71  PIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVYLLHLDISVDLR 130

Query: 477 NLAGWSPLAEAISYGDRQTISTLVR 551
           +    +PL  A  +G+    + L+R
Sbjct: 131 DDQQHTPLMWASYHGNEPITNCLLR 155



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 324 GDVRKLSSLLRNN--EVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVK-VKNLAGWS 494
           G++  + +L+ +   +V   D+ G TALH A +  +    + LL H A V  +      +
Sbjct: 11  GELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAIGGDLQAA 70

Query: 495 PLAEAISYGDRQTISTLVR 551
           P+  A   G  +T+  LV+
Sbjct: 71  PIHWAAKRGSVKTVHYLVQ 89


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -1

Query: 457 LCANNNCTHSLRPNITARCKAVFPCLSLRVTSLFLSNEDSLRTSPIKIHSC 305
           L  +NN TH L+     +C A FP   L    LFLS E++L T     H C
Sbjct: 579 LACDNNGTHVLQ-----KCIAKFPPEKLE--PLFLSMEENLITLATNRHGC 622


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 557 QATGSRTNGNQEA*SHTSSLTNSGLLYGT*MGLPFMGSFSL 679
           ++ GS+T+GN  A   T  L N+ +L G   GL  +G  +L
Sbjct: 247 RSMGSKTSGNTSATFRTVLLANNVVLLGNKPGLGNVGGGAL 287


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 431 LFTSQHNSKVQSCVPMFVLTGHLIIS 354
           +FT + ++K  SC+  F ++GHL++S
Sbjct: 259 IFTWKGHTKGISCLRFFPISGHLLLS 284


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 641 FHIEVLNL*ESSYEIRPPDFHLFSSLLLE 555
           FH  +  L   S   RP DFHLF S L +
Sbjct: 115 FHAMIRKLHMLSNNARPTDFHLFLSQLAQ 143


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 662  MGSFSLKNFTIRCFVKFFKSGSKIRLDT 745
            M    ++NF ++C  K+F    K+RL T
Sbjct: 1869 MNEMCIENFLMKCTRKYFDEVRKLRLGT 1896


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
 Frame = +3

Query: 261 MSNANYSEGKENYPLHECIFIGDVRKLSSLLRNNEVTRKDK---HGNTALHLAVMLGRKE 431
           ++NA  S G  N  +H C   G +  L  LL  + V   ++    G+T LH AVM  +K+
Sbjct: 39  INNARDSLG--NDCVHVCTKYGSLECLDWLLDISGVNLNNRCRMTGDTPLHFAVMFIKKD 96

Query: 432 ------CVQLLLAHSAPVKVKNLAGWSPL 500
                  V++L+   A   + N  G+ P+
Sbjct: 97  QETALRMVEMLMEVGADPLLTNNDGFRPI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,445
Number of Sequences: 5004
Number of extensions: 66740
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)