Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1519
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    26   2.3  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   3.0  
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.0  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.3  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    24   7.0  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   9.3  

>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 373 QVTCSCVKPKLGRGASLGGVASRCPHSGPPS 281
           QVT  C  P LG+  ++G +++     G P+
Sbjct: 332 QVTSGCPSPTLGKNIAMGYISTGLHQVGTPA 362


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 321 GGWPPAAPTRGPPACPDARP 262
           GG P AAP   P A P A P
Sbjct: 616 GGMPGAAPGAAPGAAPGAAP 635


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 331 ASLGGVASRCPHSGPPSMSRCSSPATLTTVSHYST 227
           A +GG+  RCP   P  + R +    L  +SH++T
Sbjct: 74  AGVGGIVVRCPSRKP--IYRTTRIQYLLLISHFTT 106


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 75  HSLNVLNHYSKFK*AILLSFFFF 7
           H +N  N YS +   ++ S FFF
Sbjct: 79  HKMNCCNFYSNYNILLVSSLFFF 101


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 217 HGVKCCSVKQSSKWLGTSIWT 279
           H +   S+ QSS+ LG ++WT
Sbjct: 173 HPILIHSIDQSSEILGAAVWT 193


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 84  KYPHSLNVLNHYS 46
           K  H++N+LNHY+
Sbjct: 809 KIEHAINILNHYN 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,483
Number of Sequences: 5004
Number of extensions: 23175
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)