Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1519
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    27   3.4  
AC024838-6|AAF60823.1|  214|Caenorhabditis elegans Hypothetical ...    27   4.5  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    27   4.5  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    27   4.5  
Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    27   6.0  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -2

Query: 340 GRGASLGGVASRCPHSGPPSMSRCSSPATLTTVSHYST*RRDVSRVTN 197
           GR AS   V S    S P S S  +SPA ++T+S  S  +   S VTN
Sbjct: 596 GRAASPESVRSSRSPSPPASSSGRTSPA-MSTISSMSRLKVSASNVTN 642


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -2

Query: 340 GRGASLGGVASRCPHSGPPSMSRCSSPATLTTVSHYST*RRDVSRVTN 197
           GR AS   V S    S P S S  +SPA ++T+S  S  +   S VTN
Sbjct: 596 GRAASPESVRSSRSPSPPASSSGRTSPA-MSTISSMSRLKVSASNVTN 642


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 248 RQSGWGRASGHAGGPRVGAAGG 313
           R  GWGR     GGP  G  GG
Sbjct: 39  RSGGWGRPGWGGGGPGWGRGGG 60


>AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical
           protein F16B4.4 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 221 ALSAVV*NSRQSGWGRASGHAGGPR--VGAAGGH 316
           A++AVV N+   G+GR +G  G P    GA GG+
Sbjct: 9   AIAAVVVNAYPGGYGRPAGGYGPPSGGYGAPGGY 42


>Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical
           protein F49B2.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 363 APV*SQNSAGERL*GG--WPPAAPTRGPPACPDARPQ 259
           APV  Q S   R   G   PP AP  GP +C   RP+
Sbjct: 195 APVGGQPSTPSREFNGSHGPPRAPGLGPASCQKVRPR 231


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 336 GERL*GGWPPAAPTRGPPACPDARPQP 256
           G R  GG PP  P R P A P   P P
Sbjct: 340 GMRYPGGMPPPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 336 GERL*GGWPPAAPTRGPPACPDARPQP 256
           G R  GG PP  P R P A P   P P
Sbjct: 350 GMRYPGGMPPPPPPRYPSAGPGMYPPP 376


>AC024838-6|AAF60823.1|  214|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.6 protein.
          Length = 214

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 309 PAAPTRGPPACPDARP 262
           P AP   PPA PDA P
Sbjct: 42  PPAPASAPPAAPDAAP 57


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 260 WGRASGHAGGPRVGAAGGHPP*RRSPA 340
           W ++S  A  PR+G  GG PP  R PA
Sbjct: 692 WNQSS--APPPRMGGMGGQPPMSRVPA 716


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 260 WGRASGHAGGPRVGAAGGHPP*RRSPA 340
           W ++S  A  PR+G  GG PP  R PA
Sbjct: 692 WNQSS--APPPRMGGMGGQPPMSRVPA 716


>Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical
           protein C41G7.6 protein.
          Length = 219

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 309 PAAPTRGPPACPDARP 262
           P AP   PPA PDA P
Sbjct: 41  PTAPAPAPPAAPDAPP 56


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 242 NSRQSGWGRASGHAGGPRVGAAGG 313
           N+   GWGR  G  GG   G  GG
Sbjct: 51  NNGGGGWGRGGGRGGGDWGGNNGG 74


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 349 PKLGRGASLGGVASRCPHSGPPSMSRCSSPATLTTVSHYS 230
           PK+     L G+    P   P S S  S+ AT+  V+H S
Sbjct: 155 PKINNFQKLFGICRTSPKVAPSSDSLSSAAATVRKVTHSS 194


>Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical
           protein K07F5.11 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 257 GWGRASGHAGGPRVGAAGGHPP 322
           G G A G  G  +VG AG  PP
Sbjct: 24  GGGPAGGGGGASKVGGAGAPPP 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,078,785
Number of Sequences: 27780
Number of extensions: 148010
Number of successful extensions: 554
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)