Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1519
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   0.92 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 322 GGVASRCPHSGPPSMSRCSSPATLTTVS 239
           G  + R P++ P    +C+S  T+T  S
Sbjct: 734 GEASPRSPNASPSPAEQCASTTTITARS 761


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 309 PAAPTRGPPACPDARPQP 256
           P AP RG P  P   P P
Sbjct: 31  PQAPQRGSPPNPSQGPPP 48


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 263 GRASGHAGGPRVGAAGG 313
           G  S  AGG   GA+GG
Sbjct: 21  GPGSSSAGGVVTGASGG 37


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -2

Query: 169 NLNITFINAGLTFE 128
           N N+ ++N G+T++
Sbjct: 57  NFNLNYVNKGVTYK 70



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 42  IWNNDLKHLNYVDTFKITS 98
           +W   LKH NY+    I S
Sbjct: 157 VWVELLKHFNYMKVIFIHS 175


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 163 NITFINAGLTFEFGNYNRALITDVILK 83
           +IT  NAG   E  +YN A+ T  IL+
Sbjct: 89  DITLKNAGTPPEAVSYNVAVPTKSILE 115


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 254  SGWGRASGHAGGPRVGAAGGHP 319
            +G G   G  G     AAG HP
Sbjct: 1711 AGLGGLGGLGGAAEASAAGLHP 1732


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 254  SGWGRASGHAGGPRVGAAGGHP 319
            +G G   G  G     AAG HP
Sbjct: 1707 AGLGGLGGLGGAAEASAAGLHP 1728


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 163 NITFINAGLTFEFGNYNRALITDVILK 83
           +IT  NAG   E  +YN A+ T  IL+
Sbjct: 89  DITLKNAGTPPEAVSYNVAVPTKSILE 115


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 328 SLGGVASRCPHSGPPSMSRCSSPATLTTVSHYST 227
           +L  + SR  H  PP+ S  S PAT+TT +  +T
Sbjct: 85  NLEQIGSRPLH--PPASST-SLPATITTTTTTTT 115



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 269 ASGHAGGPRVGAAGG 313
           A+G  G P VGA GG
Sbjct: 573 AAGVGGVPVVGAGGG 587


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +1

Query: 223 VKCCSVKQSSKWLGTSIWT 279
           VK C+   +  W+G+  W+
Sbjct: 361 VKRCNATGAFSWIGSDGWS 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,235
Number of Sequences: 438
Number of extensions: 2095
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)