Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1518
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    29   0.66 
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    27   3.5  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   3.5  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   6.1  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   8.1  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   8.1  

>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 44  LNDIVNYIKQFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDALINIIKDEISP 208
           LN ++ +IK+ YG+   F+  G+     LL    Q D++ + D    ++ D + P
Sbjct: 650 LNSLLLFIKEDYGTNRDFVFVGVEGIWKLL---RQQDYIPKNDICTMVVNDSLEP 701


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 77  YGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDA 175
           YG     +LE I+    +L+G+   +H S+F A
Sbjct: 407 YGCSSTTLLEAILTEGAVLSGIINSNHNSEFYA 439


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 484 LVTRFCNDNKFVHIFLAHSACFWGGNICF 570
           +VT+F   N   HI  AH  C  G  I F
Sbjct: 219 IVTKFLEYNNMKHILRAHQLCSEGYQILF 247


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 20  NQRSYSVLLNDIVNYIKQFYGSEEAFML-EGIIPSATLLTGVSQPDHVSQFDALINIIKD 196
           +Q+++S +  D  N+I +    ++     E  IP     T  S  DH+  FD L + I +
Sbjct: 147 SQQAFSEIGYDASNWIDELDSQQQVLSFPEFDIPEIKTET-CSNKDHLENFDYLSSSIPE 205

Query: 197 EISPHVAIVNSQDSL 241
              P  +++ S   L
Sbjct: 206 TSGPASSVLPSSSQL 220


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 542 LVFGVATSVSALHKSFPYEVSSKLLIKVFHSHS 640
           LVF     VS  HK   +  + K++ ++ HSHS
Sbjct: 21  LVFAHKLGVSRFHKLKSHSGARKIINEMLHSHS 53


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 205 SSCGNS*FTRFVIIKTYS*EHGLAVDWE*FKK*RRMRCIINK 330
           +SC N   T    I+T+    G AVD + FK   R+ C++ K
Sbjct: 388 ASCNNDYTTLLYQIRTF----GYAVDEKHFKTNERLECLLEK 425


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 300 FFKSFPINCQTMFSTICFNDNESCE 226
           F KS       + S  CFND+++CE
Sbjct: 231 FLKSVMWTFTLLISRSCFNDDQACE 255


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/15 (73%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
 Frame = -1

Query: 315 SHSSS-FFKSFPINC 274
           SHSS+ FFKSF +NC
Sbjct: 181 SHSSTPFFKSFDLNC 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,804
Number of Sequences: 5004
Number of extensions: 59498
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)