Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1518
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 41 0.001
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976... 31 1.2
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 29 4.8
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 28 8.4
06_03_0621 + 22812810-22814267 28 8.4
02_03_0020 - 13996688-13996785,13997168-13997217,13997516-139976... 28 8.4
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +2
Query: 443 LVIVIPDFESFNCHLLQDFVMIISSYISSLPIVLVFGVATSVSALHKSFPYEVSSKLLIK 622
+V+VI D E + +L + VM++S ++ +PI V G+AT++ A K E +L
Sbjct: 281 IVVVIDDLEQCSGDVLGELVMMLSEWVIKIPIFFVMGIATTLDAPRKLLSSEDLQRLEPC 340
Query: 623 VFHSHSSAVYMNQVLEDIFL 682
S + MN ++E I +
Sbjct: 341 KLTLGSPSDRMNALVEAILV 360
>04_04_0808 - 28196563-28196735,28197369-28197440,28197540-28197666,
28198362-28198430,28198517-28198583,28198751-28198872,
28199302-28199412,28199596-28199661,28200156-28200213,
28200307-28200343,28200420-28200513,28200967-28201032,
28201139-28201203,28201352-28201496,28201925-28202074,
28202266-28202335,28202752-28202828,28202919-28202987,
28203798-28203881,28204018-28204061,28204172-28204273,
28204420-28204618,28204672-28204727,28204886-28204958,
28205685-28205771,28205863-28205976,28206985-28207092,
28207183-28207278,28207722-28207787,28208130-28208222,
28208429-28208512,28208961-28209078,28209191-28209267,
28209459-28209641,28210542-28210636,28210903-28211053,
28212218-28212325,28212513-28212612,28212788-28212840,
28214022-28214102
Length = 1269
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 462 SGITITNVFVEIDFFFLLVDSFV--YFEWYHVFRVF-IVH*LFFNLCFVDNTSHSSS 301
SGIT+T + I F + FV YF+ Y + +H L F C++ +SH SS
Sbjct: 1101 SGITLTKLVGVIVLRFAKSEVFVVYYFQMYLALVIIGFLHGLIFLPCYIATSSHPSS 1157
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 77 YGSEEAFMLEGIIPSATLLTGVSQP--DHVSQFDAL 178
YG E +G++PS T+ SQ DH ++F AL
Sbjct: 1241 YGKEPLAANDGVLPSCTVCANFSQASGDHSNEFTAL 1276
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 137 GVSQPDHVSQFDALINIIKDEISPHVAIVNSQ-DSLSLKHIVENMVWQLIGNDLKNDEEC 313
G + D++ FD +++ KDE S I++ + D + N +++ KND
Sbjct: 725 GAVRIDNIGSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLF 784
Query: 314 DVLSTKHKLKKSQ 352
D S K K S+
Sbjct: 785 DARSWKTKTSNSE 797
>06_03_0621 + 22812810-22814267
Length = 485
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 137 GVSQPDHVSQFDALINIIKDEISPHVAIVNSQDSLSLKHIVENM 268
G + P HVS+ + I +EI P VA D+ + ++EN+
Sbjct: 181 GGAAPFHVSRMPEHVTITPEEIPPTVASFADPDNPIARFMIENV 224
>02_03_0020 -
13996688-13996785,13997168-13997217,13997516-13997619,
13997664-13997764,13998436-13998505,13998604-13999422,
14000894-14001052
Length = 466
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 500 VMIISSYISSLPIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVLE 670
VM +SS+ISS PIV + S L K P ++ V+H ++ + LE
Sbjct: 208 VMFVSSFISSEPIVHLHETERPSSPLIKPKPCLSGPHNIVLVYHQETTRFLHDASLE 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,114
Number of Sequences: 37544
Number of extensions: 310887
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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