Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1518
         (711 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060817-1|AAL28365.1|  721|Drosophila melanogaster GH28787p pro...   155   4e-38
AF153209-1|AAD47349.1|  721|Drosophila melanogaster origin recog...   155   4e-38
AF152093-1|AAD32712.2|  721|Drosophila melanogaster LATHEO protein.   155   4e-38
AF139062-1|AAD39472.1|  721|Drosophila melanogaster origin recog...   155   4e-38
AE013599-1658|AAM68599.1|  721|Drosophila melanogaster CG4088-PB...   155   4e-38
AE013599-1657|AAF58411.1|  721|Drosophila melanogaster CG4088-PA...   155   4e-38

>AY060817-1|AAL28365.1|  721|Drosophila melanogaster GH28787p
           protein.
          Length = 721

 Score =  155 bits (377), Expect = 4e-38
 Identities = 85/236 (36%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
 Frame = +2

Query: 14  ELNQRSYSVLLNDIVNYIKQFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDALINIIK 193
           +L  RSY+  L  +V+++    G  E    + ++P+A LLTG++QPDH+SQF AL   + 
Sbjct: 66  DLQHRSYARTLEQLVDFV---VGQAERDTPDEVLPTAALLTGINQPDHLSQFTALTQRLH 122

Query: 194 DEISPHVAIVNSQDSLSLKHIVENMVWQLIGNDLK------NDEECDVLSTKHK-LKKSQ 352
            + +  V ++ S+D  +LK  VE +V+ L+ ++ +       DE+ D      K L++SQ
Sbjct: 123 AQRAAMVCVLQSRDCATLKAAVETLVFGLVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQ 182

Query: 353 CTMKTLKTWYHXXXXXXXXXXXXXXXXXXXLVIVIPDFESFNCHLLQDFVMIISSYISSL 532
           CTMK LK+WY                    LV+++PDFE FN  +LQD ++I+S++  SL
Sbjct: 183 CTMKQLKSWY--------TNNFDSEQKRRQLVVILPDFECFNASVLQDLILILSAHCGSL 234

Query: 533 PIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVLEDIFLTHTVPF 700
           P VLV GVAT+++A+H + PY VSSK+ ++VF + ++   +N+VL+ + L+    F
Sbjct: 235 PFVLVLGVATAMTAVHGTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAF 290


>AF153209-1|AAD47349.1|  721|Drosophila melanogaster origin
           recognition complex subunit protein.
          Length = 721

 Score =  155 bits (377), Expect = 4e-38
 Identities = 85/236 (36%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
 Frame = +2

Query: 14  ELNQRSYSVLLNDIVNYIKQFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDALINIIK 193
           +L  RSY+  L  +V+++    G  E    + ++P+A LLTG++QPDH+SQF AL   + 
Sbjct: 66  DLQHRSYARTLEQLVDFV---VGQAERDTPDEVLPTAALLTGINQPDHLSQFTALTQRLH 122

Query: 194 DEISPHVAIVNSQDSLSLKHIVENMVWQLIGNDLK------NDEECDVLSTKHK-LKKSQ 352
            + +  V ++ S+D  +LK  VE +V+ L+ ++ +       DE+ D      K L++SQ
Sbjct: 123 AQRAAMVCVLQSRDCATLKAAVETLVFGLVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQ 182

Query: 353 CTMKTLKTWYHXXXXXXXXXXXXXXXXXXXLVIVIPDFESFNCHLLQDFVMIISSYISSL 532
           CTMK LK+WY                    LV+++PDFE FN  +LQD ++I+S++  SL
Sbjct: 183 CTMKQLKSWY--------TNNFDSEQKRRQLVVILPDFECFNASVLQDLILILSAHCGSL 234

Query: 533 PIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVLEDIFLTHTVPF 700
           P VLV GVAT+++A+H + PY VSSK+ ++VF + ++   +N+VL+ + L+    F
Sbjct: 235 PFVLVLGVATAMTAVHGTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAF 290


>AF152093-1|AAD32712.2|  721|Drosophila melanogaster LATHEO protein.
          Length = 721

 Score =  155 bits (377), Expect = 4e-38
 Identities = 85/236 (36%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
 Frame = +2

Query: 14  ELNQRSYSVLLNDIVNYIKQFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDALINIIK 193
           +L  RSY+  L  +V+++    G  E    + ++P+A LLTG++QPDH+SQF AL   + 
Sbjct: 66  DLQHRSYARTLEQLVDFV---VGQAERDTPDEVLPTAALLTGINQPDHLSQFTALTQRLH 122

Query: 194 DEISPHVAIVNSQDSLSLKHIVENMVWQLIGNDLK------NDEECDVLSTKHK-LKKSQ 352
            + +  V ++ S+D  +LK  VE +V+ L+ ++ +       DE+ D      K L++SQ
Sbjct: 123 AQRAAMVCVLQSRDCATLKAAVETLVFGLVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQ 182

Query: 353 CTMKTLKTWYHXXXXXXXXXXXXXXXXXXXLVIVIPDFESFNCHLLQDFVMIISSYISSL 532
           CTMK LK+WY                    LV+++PDFE FN  +LQD ++I+S++  SL
Sbjct: 183 CTMKQLKSWY--------TNNFDSEQKRRQLVVILPDFECFNASVLQDLILILSAHCGSL 234

Query: 533 PIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVLEDIFLTHTVPF 700
           P VLV GVAT+++A+H + PY VSSK+ ++VF + ++   +N+VL+ + L+    F
Sbjct: 235 PFVLVLGVATAMTAVHGTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAF 290


>AF139062-1|AAD39472.1|  721|Drosophila melanogaster origin
           recognition complex subunit3 protein.
          Length = 721

 Score =  155 bits (377), Expect = 4e-38
 Identities = 85/236 (36%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
 Frame = +2

Query: 14  ELNQRSYSVLLNDIVNYIKQFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDALINIIK 193
           +L  RSY+  L  +V+++    G  E    + ++P+A LLTG++QPDH+SQF AL   + 
Sbjct: 66  DLQHRSYARTLEQLVDFV---VGQAERDTPDEVLPTAALLTGINQPDHLSQFTALTQRLH 122

Query: 194 DEISPHVAIVNSQDSLSLKHIVENMVWQLIGNDLK------NDEECDVLSTKHK-LKKSQ 352
            + +  V ++ S+D  +LK  VE +V+ L+ ++ +       DE+ D      K L++SQ
Sbjct: 123 AQRAAMVCVLQSRDCATLKAAVETLVFGLVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQ 182

Query: 353 CTMKTLKTWYHXXXXXXXXXXXXXXXXXXXLVIVIPDFESFNCHLLQDFVMIISSYISSL 532
           CTMK LK+WY                    LV+++PDFE FN  +LQD ++I+S++  SL
Sbjct: 183 CTMKQLKSWY--------TNNFDSEQKRRQLVVILPDFECFNASVLQDLILILSAHCGSL 234

Query: 533 PIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVLEDIFLTHTVPF 700
           P VLV GVAT+++A+H + PY VSSK+ ++VF + ++   +N+VL+ + L+    F
Sbjct: 235 PFVLVLGVATAMTAVHGTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAF 290


>AE013599-1658|AAM68599.1|  721|Drosophila melanogaster CG4088-PB,
           isoform B protein.
          Length = 721

 Score =  155 bits (377), Expect = 4e-38
 Identities = 85/236 (36%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
 Frame = +2

Query: 14  ELNQRSYSVLLNDIVNYIKQFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDALINIIK 193
           +L  RSY+  L  +V+++    G  E    + ++P+A LLTG++QPDH+SQF AL   + 
Sbjct: 66  DLQHRSYARTLEQLVDFV---VGQAERDTPDEVLPTAALLTGINQPDHLSQFTALTQRLH 122

Query: 194 DEISPHVAIVNSQDSLSLKHIVENMVWQLIGNDLK------NDEECDVLSTKHK-LKKSQ 352
            + +  V ++ S+D  +LK  VE +V+ L+ ++ +       DE+ D      K L++SQ
Sbjct: 123 AQRAAMVCVLQSRDCATLKAAVETLVFGLVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQ 182

Query: 353 CTMKTLKTWYHXXXXXXXXXXXXXXXXXXXLVIVIPDFESFNCHLLQDFVMIISSYISSL 532
           CTMK LK+WY                    LV+++PDFE FN  +LQD ++I+S++  SL
Sbjct: 183 CTMKQLKSWY--------TNNFDSEQKRRQLVVILPDFECFNASVLQDLILILSAHCGSL 234

Query: 533 PIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVLEDIFLTHTVPF 700
           P VLV GVAT+++A+H + PY VSSK+ ++VF + ++   +N+VL+ + L+    F
Sbjct: 235 PFVLVLGVATAMTAVHGTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAF 290


>AE013599-1657|AAF58411.1|  721|Drosophila melanogaster CG4088-PA,
           isoform A protein.
          Length = 721

 Score =  155 bits (377), Expect = 4e-38
 Identities = 85/236 (36%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
 Frame = +2

Query: 14  ELNQRSYSVLLNDIVNYIKQFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDALINIIK 193
           +L  RSY+  L  +V+++    G  E    + ++P+A LLTG++QPDH+SQF AL   + 
Sbjct: 66  DLQHRSYARTLEQLVDFV---VGQAERDTPDEVLPTAALLTGINQPDHLSQFTALTQRLH 122

Query: 194 DEISPHVAIVNSQDSLSLKHIVENMVWQLIGNDLK------NDEECDVLSTKHK-LKKSQ 352
            + +  V ++ S+D  +LK  VE +V+ L+ ++ +       DE+ D      K L++SQ
Sbjct: 123 AQRAAMVCVLQSRDCATLKAAVETLVFGLVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQ 182

Query: 353 CTMKTLKTWYHXXXXXXXXXXXXXXXXXXXLVIVIPDFESFNCHLLQDFVMIISSYISSL 532
           CTMK LK+WY                    LV+++PDFE FN  +LQD ++I+S++  SL
Sbjct: 183 CTMKQLKSWY--------TNNFDSEQKRRQLVVILPDFECFNASVLQDLILILSAHCGSL 234

Query: 533 PIVLVFGVATSVSALHKSFPYEVSSKLLIKVFHSHSSAVYMNQVLEDIFLTHTVPF 700
           P VLV GVAT+++A+H + PY VSSK+ ++VF + ++   +N+VL+ + L+    F
Sbjct: 235 PFVLVLGVATAMTAVHGTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAF 290


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,570,603
Number of Sequences: 53049
Number of extensions: 582835
Number of successful extensions: 1442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)