Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1518
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical pr...    39   0.004
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    32   0.35 
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    29   4.3  
U88170-10|AAB42242.2|  340|Caenorhabditis elegans Serpentine rec...    28   5.7  
U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical
           protein F43A11.6 protein.
          Length = 322

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 26/88 (29%), Positives = 44/88 (50%)
 Frame = -1

Query: 519 YELIIITKSCNK*QLKLSKSGITITNVFVEIDFFFLLVDSFVYFEWYHVFRVFIVH*LFF 340
           YE ++I  SCN   + +  SG     VF+ ++ F  L    VY + +H+   FI+  +  
Sbjct: 92  YETVVII-SCNNIYMVIQYSG-----VFIAVNRFCALFLPIVYKKLFHIKTTFILTMIII 145

Query: 339 NLCFVDNTSHSSSFFKSFPINCQTMFST 256
            L  +DN ++  +F    PI C T +S+
Sbjct: 146 ALKLIDNLNYLITF---LPIECFTFYSS 170


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 158 VSQFDALINIIKDEISPHV---AIVNSQDSLSLKHIVENMVWQLIGNDLKNDEECDVL 322
           ++ +D +++II +E S H    AIV+  +  S+   VE M+   IG  +K   EC+ L
Sbjct: 509 INNYDLILSIIDNEESKHTKIYAIVHELEQKSIDDFVEEMLEPHIGYMIKFVNECESL 566


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 372 FRVFIVH*LFFNL-CFVDNTSHSSSFFKSFPINCQTMFSTICFNDN 238
           F +F +   FF+  C+ + T  +S   KS+P NC  +   + FN N
Sbjct: 488 FPIFCLIFAFFDKNCYFNRTYVTSETMKSWPTNCSMVCGDLYFNAN 533


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
 Frame = +2

Query: 2   SVSKELNQRSYSVLLNDIVNYIK-QFYGSEEAFMLEGIIPSATLLTGVSQPDHVSQFDAL 178
           S+ K LNQ S   L  D V   K    G E A++L G+          S  DH++ FD L
Sbjct: 441 SLIKTLNQSS---LFADAVFSEKLSTTGQETAYILGGLQSLDAFYN--SATDHIAFFDCL 495

Query: 179 INIIKDEISP-HVAIVNSQDSLSLKHIVENMVWQLIGNDLKN-DEECDVLSTK 331
           +N+   ++ P  +  +N    + ++ I + +    + NDL N   + D L TK
Sbjct: 496 LNVAYYDLIPLAIDTLNKVRKMDVQPIRDGID---VVNDLFNVSNQLDELKTK 545


>U88170-10|AAB42242.2|  340|Caenorhabditis elegans Serpentine
           receptor, class h protein50 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 462 SGIT-ITNVFVEIDFFFLLVDSFVYFEWYHVFRVFIV 355
           SG+   TN+ + I+  FL+V SF+Y     +   F V
Sbjct: 207 SGLAYFTNIMIAIEIIFLIVHSFIYLRKSQMVSTFSV 243


>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 443 LVIVIPDFESFNCHLLQDFVMIISSYISSLPIVLVFGVATSVSALHKSF 589
           L I+IP+F   N    + ++ ++S  ISSL    +  V   +  L  SF
Sbjct: 64  LSILIPEFRKMNDTTKKQYIFVVSRGISSLSASSIMMVLRLLKMLSTSF 112


>AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical
           protein K04F1.13 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 339 NLCFVDNTSHSSSFFKSFPINCQTMFSTICFN 244
           N C   NTS +SS  K++P  C T+   + FN
Sbjct: 33  NDCHFYNTSITSSTIKNWPSLCTTVCGNLVFN 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,553
Number of Sequences: 27780
Number of extensions: 323522
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)