Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1517
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0737 - 13529180-13529543,13530661-13531178                       31   0.76 
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793     29   2.3  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   4.1  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    28   5.4  
10_08_0100 + 14788426-14789097                                         27   7.1  
01_02_0007 + 10132380-10133201                                         27   7.1  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    27   9.4  
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    27   9.4  

>02_02_0737 - 13529180-13529543,13530661-13531178
          Length = 293

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +1

Query: 346 PLPGRK---ENPLPRE-SARSPTLPRCQTCPLPS*RDCQGTS*RTATLPSRKEGALPSTC 513
           PL GR+    +P PR    R P  PR      PS   CQ      A  PSR   ALPS  
Sbjct: 70  PLQGRRPAESSPQPRPPQVRRPQPPRRHRSTAPSSSSCQFQ----AAAPSRPPSALPSPT 125

Query: 514 PSRQT 528
            S  T
Sbjct: 126 ASSST 130


>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
          Length = 576

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +1

Query: 322 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 447
           S  R++  P P +K  P P  +   P      R   CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 328 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 429
           PRR A P  GR  +P P  S RSP  PR    P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 346 PLPGRKENPLPRESARSPTLPRCQTCPLP 432
           PLP R+  PLP  SA  P     +  PLP
Sbjct: 16  PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44


>10_08_0100 + 14788426-14789097
          Length = 223

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 376 PRESARSPTLPRCQTCPLPS*RDCQGTS*RTATLPSRKEGALPSTC 513
           PR  A SP  PR   C      DCQ  + R+A  P+R   +    C
Sbjct: 178 PRRPAPSPASPRLPMCSYTCTVDCQTRNVRSA--PTRPSSSTDGGC 221


>01_02_0007 + 10132380-10133201
          Length = 273

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 328 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLP 432
           PR +  PLP    NP P+   +    P+ Q  PLP
Sbjct: 54  PRPQPQPLPQPNPNPQPQPLPQPQPQPQPQPQPLP 88


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 313 SSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQ 417
           +S S P+RK    PGRK  P P  S  +   P  +
Sbjct: 7   ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAE 41


>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 349 LPGRKENPLPRESARSPTLPRCQTCP 426
           LPG   NP  R  AR P LPR  T P
Sbjct: 639 LPGVVVNPATRRWARLPPLPRHFTVP 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,407,169
Number of Sequences: 37544
Number of extensions: 190030
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)