Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1517
         (530 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    27   0.52 
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       24   3.7  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   6.4  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   8.4  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.4  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 26.6 bits (56), Expect = 0.52
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 346 PLPGRKENPLPRESARSPTLPRCQTCPLP 432
           P   R E  + R +  SP L +  TCP+P
Sbjct: 37  PRTRRSEAVMTRSTPSSPRLAQASTCPVP 65


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -2

Query: 496 HLLFDWVGL------RYVNWYLDNLFNWVRDMFDNGVGLGNV 389
           HL++ + G+      R ++ YLD   NW R      VGL NV
Sbjct: 62  HLMYGFFGINEDATVRIIDPYLDLEENWGRGHIKRFVGLKNV 103


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 428 KGHV*QRGRVGERALSRGRGFSFLPG 351
           KG    RG+VGER     +G    PG
Sbjct: 322 KGQAGDRGQVGERGHKGEKGLPGQPG 347


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 428 KGHV*QRGRVGERALSRGRGFSFLPGR-GCAFRRG 327
           KG   + GR+GER L   +G   L G  G + R+G
Sbjct: 423 KGFKGEPGRIGERGLMGEKGDMGLTGPVGLSGRKG 457


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 322 SLPRRKAHPLPGRK 363
           SLPRRK  P P R+
Sbjct: 257 SLPRRKGGPYPRRR 270


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,007
Number of Sequences: 2352
Number of extensions: 5985
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49051644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)