Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1516
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0250 - 16179646-16179759,16180197-16180325,16180519-161806... 36 0.034
03_01_0326 + 2535800-2535938,2536891-2536959,2537310-2537375,253... 33 0.18
03_06_0579 + 34870958-34874578 33 0.32
07_01_0926 - 7775536-7775616,7775695-7775787,7775903-7775965,777... 32 0.56
05_06_0082 - 25425050-25425479,25426551-25426783 32 0.56
03_06_0475 + 34193951-34194023,34195414-34195486,34195572-341956... 32 0.56
02_04_0402 + 22618998-22619043,22619206-22619345,22620067-226201... 32 0.56
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 31 0.74
06_03_0414 - 20548577-20549006,20553521-20553744 31 0.74
05_03_0286 - 11623575-11624063,11625098-11625262 31 0.74
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 31 0.74
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 31 0.74
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 31 0.74
03_04_0102 + 17288910-17289767 31 0.98
09_02_0464 - 9591139-9591571,9592601-9592818 30 1.7
05_07_0127 - 27872803-27873238,27873842-27874059 30 1.7
06_03_1387 - 29820358-29821035 30 2.3
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 29 3.0
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 29 3.0
04_04_0191 + 23468410-23468455,23468560-23468699,23469119-234692... 29 3.0
01_06_1343 - 36461476-36461961,36463355-36463519 29 3.0
04_04_0582 + 26369537-26369914,26371598-26371887,26371985-263721... 29 3.9
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938... 29 5.2
05_01_0036 + 253734-253904,255216-255707 29 5.2
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 29 5.2
01_06_0186 + 27294973-27295211,27295610-27296045 29 5.2
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 28 6.9
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 28 9.1
10_08_0842 - 20954712-20957738 28 9.1
03_06_0637 - 35219212-35219754,35220405-35220587 28 9.1
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 9.1
>10_08_0250 -
16179646-16179759,16180197-16180325,16180519-16180640,
16181073-16181138,16182202-16182270,16182989-16183157
Length = 222
Score = 35.9 bits (79), Expect = 0.034
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +1
Query: 136 FNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTICDT 315
F IL IG++G+GKS+L+ S + PT+ + L +LKLTI DT
Sbjct: 20 FKILLIGDSGVGKSSLLVSFVVAAAAAHLDDDIAPTIGVDFKIKFLTIGGKKLKLTIWDT 79
Query: 316 VG 321
G
Sbjct: 80 AG 81
>03_01_0326 +
2535800-2535938,2536891-2536959,2537310-2537375,
2537979-2538100,2538501-2538629,2540462-2540569
Length = 210
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 136 FNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTICDT 315
F IL IG++ +GKS+L+ S + S PT+ + L + +LKLTI DT
Sbjct: 13 FKILLIGDSAVGKSSLLVSFVSA---SHIDDEIAPTIGVDFKIKFLTVNGKKLKLTIWDT 69
Query: 316 VG 321
G
Sbjct: 70 AG 71
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
F N+L +G+TG+GKS ++S+F + +S S T +K E+ +K +
Sbjct: 583 FSCNVLVLGKTGVGKSATINSIFGED-KSKTSAFLPATTAVK----EISGVVGGVKFRVV 637
Query: 310 DTVGYGDQVNKEDSFKAVVDYI 375
DT G G E S + V++ +
Sbjct: 638 DTPGLGTTHMDEKSNRKVLNSV 659
>07_01_0926 -
7775536-7775616,7775695-7775787,7775903-7775965,
7776326-7776423,7776661-7776761,7776865-7776937,
7778575-7778647
Length = 193
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++ +L IG++G+GKS L+ + +F +S + T+ + +E R+KL I
Sbjct: 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----FITTIGIDFKIRTIELDGKRIKLQIW 69
Query: 310 DTVG 321
DT G
Sbjct: 70 DTAG 73
>05_06_0082 - 25425050-25425479,25426551-25426783
Length = 220
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++G+GKS L+ F S + T+ ++ T L+ +K I
Sbjct: 16 YLFKVVLIGDSGVGKSNLLSRFTKNEF----SLESKSTIGVEFATRSLQVDGKVIKAQIW 71
Query: 310 DTVG 321
DT G
Sbjct: 72 DTAG 75
>03_06_0475 +
34193951-34194023,34195414-34195486,34195572-34195672,
34195912-34196009,34196326-34196388,34196534-34196626,
34196697-34196774
Length = 192
Score = 31.9 bits (69), Expect = 0.56
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLM----DSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLK 297
++ +L IG++G+GKS L+ D F T+F ++ + K T EL+ R+K
Sbjct: 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG------IDFKIRTVELD--GKRIK 65
Query: 298 LTICDTVG 321
L I DT G
Sbjct: 66 LQIWDTAG 73
>02_04_0402 +
22618998-22619043,22619206-22619345,22620067-22620149,
22620234-22620438,22620524-22620592,22621099-22621188
Length = 210
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F + IG+TG+GKS L+ + F+ H+L T+ ++ + N +KL I
Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDL-TIGVEFGARMITIDNKPIKLQIW 60
Query: 310 DTVG 321
DT G
Sbjct: 61 DTAG 64
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++ +GKS L+ F + H+ T+ ++ T ++ + +K I
Sbjct: 12 YLFKVVIIGDSAVGKSNLLSRYARNEF----NLHSKATIGVEFQTQSMDINGKDVKAQIW 67
Query: 310 DTVG 321
DT G
Sbjct: 68 DTAG 71
>06_03_0414 - 20548577-20549006,20553521-20553744
Length = 217
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++G+GKS L+ F S + T+ ++ T L+ +K I
Sbjct: 13 YLFKVVLIGDSGVGKSNLLSRFTRNEF----SLESKSTIGVEFATRSLQVDGKVVKAQIW 68
Query: 310 DTVG 321
DT G
Sbjct: 69 DTAG 72
>05_03_0286 - 11623575-11624063,11625098-11625262
Length = 217
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++G+GKS ++ S F N S S T+ ++ T L+ +K I
Sbjct: 11 YLFKMVLIGDSGVGKSNIL-SRFTRNHFSLDSK---STIGVEFATKSLQMEGKTIKAQIW 66
Query: 310 DTVG 321
DT G
Sbjct: 67 DTAG 70
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F +L IG++G+GKS L+ + ++ S + T+ + +E+ +KL I
Sbjct: 23 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS----YISTIGVDFKIRTVEQDGKTIKLQIW 78
Query: 310 DTVG 321
DT G
Sbjct: 79 DTAG 82
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F +L IG++G+GKS L+ + ++ S + T+ + +E+ +KL I
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLES----YISTIGVDFKIRTVEQDGKTIKLQIW 62
Query: 310 DTVG 321
DT G
Sbjct: 63 DTAG 66
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F +L IG++G+GKS L+ + ++ S + T+ + +E+ +KL I
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS----YISTIGVDFKIRTVEQDGKTIKLQIW 62
Query: 310 DTVG 321
DT G
Sbjct: 63 DTAG 66
>03_04_0102 + 17288910-17289767
Length = 285
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 594 LQLSLGDGVSLSDDRYDVHFGIEFLHTHQINGLQTMTCWTDEVQ 463
LQ + DG L++ R H +LH I+ T T WT + Q
Sbjct: 150 LQAAFADGGLLTNVRNHFHHCAAYLHVQPIDADPTWTAWTGQAQ 193
>09_02_0464 - 9591139-9591571,9592601-9592818
Length = 216
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++G+GKS L+ F S + T+ ++ T + + +K I
Sbjct: 11 YLFKVVLIGDSGVGKSNLLSRFTRNEF----SLESKSTIGVEFATRSIRVDDKVVKAQIW 66
Query: 310 DTVG 321
DT G
Sbjct: 67 DTAG 70
>05_07_0127 - 27872803-27873238,27873842-27874059
Length = 217
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++G+GKS L+ F S + T+ ++ T + + +K I
Sbjct: 11 YLFKVVLIGDSGVGKSNLLSRFTRNEF----SLESKSTIGVEFATRSIHVDDKVVKAQIW 66
Query: 310 DTVG 321
DT G
Sbjct: 67 DTAG 70
>06_03_1387 - 29820358-29821035
Length = 225
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Frame = +1
Query: 121 QNGFVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKL 300
+ +VF ++ IG++ +GK+ L+ F + T+ ++ T +E R+K
Sbjct: 3 EEDYVFKVVVIGDSAVGKTQLLGRFTKDEFFID----SKSTIGIEFQTRTVEIGGKRVKA 58
Query: 301 TICDTVGYGDQVNKEDSFKAVVD-YIDAQFEAYLQEELKIKRSLSS----YHDSRLH 456
I DT G ++ ++AV Y A L ++ +RS HD R H
Sbjct: 59 QIWDTAG-------QERYRAVTSAYYRGALGAMLVYDVTSRRSFHHAARWLHDLRAH 108
>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 570 VSLSDDRYDVHFGIEFLHTHQINGLQTMTC 481
+S+ +DR+D +EFL + + GL +TC
Sbjct: 1433 LSIEEDRHDPDGHVEFLTDNHVKGLSFLTC 1462
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 97 DQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLP 240
D+++ +N I IG TG+GKST+M+ L+ ++ S SP LP
Sbjct: 80 DKILPYLTENNDFMVIGVIGPTGVGKSTIMNELY--GYDGS-SPGMLP 124
>04_04_0191 +
23468410-23468455,23468560-23468699,23469119-23469201,
23469346-23469550,23469632-23469735,23470290-23470449
Length = 245
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F + IG+TG+GKS L+ + F+ H+L T+ ++ + + +KL I
Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDL-TIGVEFGARMITVDSRPVKLQIW 60
Query: 310 DTVG 321
DT G
Sbjct: 61 DTAG 64
>01_06_1343 - 36461476-36461961,36463355-36463519
Length = 216
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTN--FESSPSPHNLPTVKLKAHTYELEESNVRLKLT 303
++F I+ IG++G+GKS ++ S F N F S S T+ ++ T L+ +K
Sbjct: 11 YLFKIVLIGDSGVGKSNIL-SRFTRNEFFLESKS-----TIGVEFATRTLQIEGKTIKAQ 64
Query: 304 ICDTVG 321
I DT G
Sbjct: 65 IWDTAG 70
>04_04_0582 +
26369537-26369914,26371598-26371887,26371985-26372156,
26372271-26372393,26372499-26372627,26372785-26372979,
26373128-26373214,26373296-26373568,26374166-26374273,
26374363-26374686
Length = 692
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +1
Query: 151 IGETGLGKSTLMDSLFN----TNFESSPSPHNLPTVKLK--AHTYELEESNVRLKLTICD 312
+G +G GKSTL+D+L F S N KL A Y ++ N+ LT+ +
Sbjct: 84 MGPSGSGKSTLLDALAGRLAANAFLSGNVLLNGRKAKLSFGAAAYVTQDDNLIGTLTVRE 143
Query: 313 TVGYGDQVNKED 348
T+GY + D
Sbjct: 144 TIGYSAMLRLPD 155
>07_03_1298 -
25592788-25592890,25593126-25593229,25593747-25593808,
25593957-25594065,25594215-25594355,25594707-25594769,
25594974-25595084,25596140-25596457
Length = 336
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +1
Query: 136 FNILCIGETGLGKSTLMDSLFNTNFESSPSPHN--LPTVKLKAHTYELEESNVRL 294
F+++ +G GK+TL++ + + + PH+ +PTV L + +E++NV+L
Sbjct: 151 FHVVILGVHKAGKTTLLEKVKSIYLKEEGLPHDRIVPTVGL--NIGRIEDANVKL 203
>05_01_0036 + 253734-253904,255216-255707
Length = 220
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++G+GKS L+ F + T+ ++ T L +K I
Sbjct: 13 YLFKVVLIGDSGVGKSNLLSRFTRNEF----CLESKSTIGVEFATRTLHVEGKIIKAQIW 68
Query: 310 DTVG 321
DT G
Sbjct: 69 DTAG 72
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 555 DRYDVHFGIEFLHTHQINGLQTMTCW 478
D Y + F EFLH H ++ L T CW
Sbjct: 261 DEYGL-FSFEFLHRHGLHLLGTTVCW 285
>01_06_0186 + 27294973-27295211,27295610-27296045
Length = 224
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 309
++F ++ IG++G+GKS L+ F S T+ ++ T + + +K I
Sbjct: 18 YLFKVVLIGDSGVGKSNLLSRFARDEF----SLETRSTIGVEFATKTVRVDDRLVKAQIW 73
Query: 310 DTVG 321
DT G
Sbjct: 74 DTAG 77
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 151 IGETGLGKSTLMDSLFNTNF 210
+G G GKSTL++ LF T+F
Sbjct: 54 VGPQGSGKSTLLNQLFGTSF 73
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 142 ILCIGETGLGKSTLMDSLFN 201
I +GETG+GKSTLM ++ N
Sbjct: 117 ISILGETGIGKSTLMLTICN 136
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFN 201
F IL +G+TG+GKS ++S+F+
Sbjct: 382 FSCTILVLGKTGVGKSATINSIFD 405
>03_06_0637 - 35219212-35219754,35220405-35220587
Length = 241
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSLFNTNF 210
++F I+ IG++G+GKS L+ +F
Sbjct: 17 YLFKIVLIGDSGVGKSNLLSRFTRNSF 43
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 130 FVFNILCIGETGLGKSTLMDSL 195
F NIL +G+ G+GKST+++S+
Sbjct: 4912 FSCNILVLGKIGVGKSTVINSI 4933
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,789,632
Number of Sequences: 37544
Number of extensions: 388873
Number of successful extensions: 1250
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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