Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1515
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.2  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   3.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.2  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   7.4  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   7.4  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   7.4  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   9.8  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   9.8  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   9.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.8  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 344 QLSLRPLQQALAGNLANNVNKLIVPPRQIVQTSPEPTSASPSM 472
           Q   + LQQA A + AN  ++    P++ VQT+PE   A+ SM
Sbjct: 281 QQQQKSLQQAKANHSANVQSRPKNYPQKPVQTTPEAVHANGSM 323


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 446 EPTSASPSMTPSETPMADSVYRKKYTEQDPGPYMGHVTLISDSNSTTSLHP 598
           +P+S S ++ PS T +  S+     +  DP   +   T  S S+ST+S  P
Sbjct: 140 DPSSVSSAILPSSTSVEVSISSSSLSSSDP---LTSSTFSSLSSSTSSSQP 187


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 440 SPEPTSASPSMTPSETPMADSVYRKKYTEQDPGPYMG 550
           +PEPTSAS   + S + + +   +  +T    GP +G
Sbjct: 68  NPEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVG 104


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +2

Query: 359 PLQQALAGNLANNVNKLIVPPRQIVQTSPEPTSASPSMTPSETPMADSVYRKKYTEQDPG 538
           P+      NL + VN +  PP    Q    PT+AS   T + + MA S Y    +   P 
Sbjct: 257 PMPSRNVNNLGSQVN-IPPPPATPSQPPRPPTNASTRSTGTSSSMAHS-YDSPPSPSSPS 314

Query: 539 PYMG----HVTLISDSN 577
              G    H+ L +DS+
Sbjct: 315 DAYGDPNQHLKLRTDSH 331


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 395 NVNKLIVPPRQIVQTSPEPTSASPSMTPSETPMADSVYRKKYTE 526
           N+   IVP    VQ  P+  S+S ++TPS +    + Y+   +E
Sbjct: 121 NIEADIVPVWGKVQRVPQAKSSSATITPSVSNKLSTAYQSIKSE 164


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 471 IEGLAEVGSGEVCTIWRGGTISLFTLFARFPAKACCSGRNESC--LSEIFGLKE 316
           +  + ++ S E+  +W+    S+     RFP   C     ++C  L+++F  KE
Sbjct: 153 LANILQIDSDELYCVWKISISSIQDAMHRFPVSECYLACLKACSILAQLFLSKE 206


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 87  YSYKLKYATISTEYQIKL 34
           Y+Y LK AT  + YQIKL
Sbjct: 362 YNYNLKNATEDSPYQIKL 379


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 414 TISLFTLFARFPAKACCSGRNESCLSEIFGL 322
           +I LF +F  FP    C   + +C+SE++ L
Sbjct: 176 SIHLFYVFQSFPWTYFCLAVSGTCISELYVL 206


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 524 EQDPGPYMGHVTLISDS 574
           E   G  MGHVT+ISDS
Sbjct: 349 ESRKGRKMGHVTIISDS 365


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 86  YICLVYNCIF*YFSVNSMELEAGTDPPDPNITEETTD--TTNSRFSQPIFFCDEFDL 250
           Y CL+   IF + ++ +M   A     DP+   E T   +TNS  ++ + F   F L
Sbjct: 250 YGCLIIADIFQFHNIYAMTTNAPNLLQDPDFQRECTAYVSTNSSNAKNVTFATIFKL 306


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +2

Query: 437 TSPEPTSA---SPSMTPSETPMADSVYRKKYTEQDPGPYMGHVTLISDSNSTTSLHPLKF 607
           T+PE TS    SP+   S TP+  S      T       +   T I+ S+   S  P+  
Sbjct: 363 TTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITS 422

Query: 608 GNFLKKS 628
            + L  S
Sbjct: 423 SSILNSS 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,907
Number of Sequences: 5004
Number of extensions: 45985
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)