Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1515
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 32 0.47
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911... 32 0.47
06_03_1310 + 29238644-29240260 30 1.9
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 30 1.9
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 29 2.5
01_01_0963 - 7577207-7577992,7578506-7578622,7578711-7578921,757... 29 2.5
05_01_0131 + 888247-888771,889092-889154 29 3.3
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 28 5.8
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 28 5.8
05_02_0114 + 6753868-6754126,6754225-6754592,6754704-6754992,675... 28 5.8
08_01_1034 - 10482670-10483400,10483442-10483964 28 7.7
04_04_0488 - 25592313-25592708 28 7.7
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 416 PPRQIVQTSPEPTSASPSMTPSETPMADS 502
PP I TSP PT S S+ P+ TP S
Sbjct: 39 PPSPIPSTSPRPTLRSSSLPPASTPSPSS 67
>01_06_1171 -
35089719-35090336,35090596-35090715,35090851-35091108,
35091934-35092563
Length = 541
Score = 31.9 bits (69), Expect = 0.47
Identities = 38/159 (23%), Positives = 69/159 (43%)
Frame = +2
Query: 122 FSVNSMELEAGTDPPDPNITEETTDTTNSRFSQPIFFCDEFDLSNVSEFVNVXXXXXXXX 301
F V +EL G D ++E + ++S+P F D+ LS + + +
Sbjct: 360 FGVVLLELITGRKNLDVRSSKEERNIV--KWSRP-FLTDDSRLSLIMDS-RIKGRFPTKA 415
Query: 302 XXLVNSFKPKISDKQLSLRPLQQALAGNLANNVNKLIVPPRQIVQTSPEPTSASPSMTPS 481
+V + +K S RP +A+ +LA+ V + VP R +Q EP++A +
Sbjct: 416 ARIVADIILRCLNKDPSERPTMRAVVESLAS-VQDIKVPCRYPLQ---EPSAAPRKVMLK 471
Query: 482 ETPMADSVYRKKYTEQDPGPYMGHVTLISDSNSTTSLHP 598
T + ++ P P + L+S +ST++L P
Sbjct: 472 STSLNGIIHHHPVVTFSPSPPSRNQHLLSPRSSTSALLP 510
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 413 VPPRQIVQTSPEPTSASPSMTPSETPMADSVYRKKYTEQDPGPYMGHVTLISDSNSTTSL 592
+PPR+ T P P+S +PS P P + P + S S+S +
Sbjct: 389 MPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKSSMPPSTSPPSSHGASPPSSSSSPPTE 448
Query: 593 HP 598
HP
Sbjct: 449 HP 450
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 492 IGVSDGVIEGLAEVGSGEVCTIWRGGTISLFTLFARFPAKACCSGR 355
+ V DGV E A+VG G +I RGG++ + R P K+ GR
Sbjct: 387 LDVDDGVSEHEADVGDGAGPSIHRGGSVG-DEISRRPPPKSMTKGR 431
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 359 PLQQALAGNLAN-NVNKLIVPPRQIVQTSPEPTSASPSMTP 478
P ALA N N N L PP I + SP+ S+ P+ P
Sbjct: 824 PAFNALAANFENPNARNLSTPPPAIRKPSPKSPSSDPTKPP 864
>01_01_0963 -
7577207-7577992,7578506-7578622,7578711-7578921,
7579406-7579442,7580781-7580902,7581292-7581500
Length = 493
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 459 AEVGSGEVCTIWRGGTISLFTLFARFPAKACCS 361
+E+ +G T+ R G + + +FAR+ A CCS
Sbjct: 334 SELTAGYYNTLLRNGYLPITQMFARYKAALCCS 366
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 431 VQTSPEP-TSASPSMTPSETPMADSVYRKKYTEQDP 535
V T P+P TS P P TP SV RK T DP
Sbjct: 68 VPTGPDPITSDPPPPPPPSTPTQFSVLRKVPTGPDP 103
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 365 QQALAGNLA-NNVNKLIVPPRQIVQTSPEPTSASPSMTPSETPMADSVYRKKYTEQDPGP 541
Q ++A LA ++V PPR +V T+P P ++ + S + A S + P P
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNSITANLASSSVAAASPPPRNLVSTTPVP 235
Query: 542 YMGHVTLISDSNSTTSLHP 598
+ ++ S+ + P
Sbjct: 236 HNSIAANLASSSVAAASPP 254
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 440 SPEPTSASPSMTPSETPMADS 502
SP P SPS TP TP+A S
Sbjct: 214 SPYPHPVSPSYTPGHTPVASS 234
>05_02_0114 +
6753868-6754126,6754225-6754592,6754704-6754992,
6755838-6755909,6757440-6757666
Length = 404
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 414 TISLFTLFARFPAKACCSG 358
T++++T F + P KACC G
Sbjct: 324 TVAMYTRFTQQPLKACCGG 342
>08_01_1034 - 10482670-10483400,10483442-10483964
Length = 417
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 396 LFARFPAKACCSGRNESCLSEIFGLKEL 313
L R + ACC + L EI GLKEL
Sbjct: 210 LLGRLLSSACCPRLQKLALEEIVGLKEL 237
>04_04_0488 - 25592313-25592708
Length = 131
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 359 PLQQALAGNLANN-VNKLIVPPRQIVQTSPEPTSASPSMTPSETPMADSVYRKKYTE 526
P + LAG+LA+ + + + R++ T P +A P P D+ R++Y E
Sbjct: 46 PNNKLLAGHLAHEFLTRGTLQGRRVEPTKPSQAAALHPGEPVPEPEPDAAKRRRYAE 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,239
Number of Sequences: 37544
Number of extensions: 291022
Number of successful extensions: 1089
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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