Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1515
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 396 LFARFPAKACCSGRNESCLSEIFGLKELT 310
           LFA+FP+ AC +  +   +S   G   +T
Sbjct: 342 LFAKFPSLACAAEPSSDAVSTTSGTTTVT 370


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 371 ALAGNLANNVNKLIVPPRQIVQTSPEPTSASPSMTPSE 484
           +L G     +N L  PP  + +T  E      S++PSE
Sbjct: 517 SLKGETVGLLNAL--PPSSMKETEEEKKKTKQSLSPSE 552


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 428 IVQTSPEPTSASPSMTPS--ETPMADSVYRKKYTEQDPGP 541
           I Q S +P+S +P   PS  ++P A          Q P P
Sbjct: 9   ITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,807
Number of Sequences: 438
Number of extensions: 3226
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)