Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1514
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.51 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.7  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.3  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   8.3  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 456 YFVGFQN-SEVMINRDNWGHSYCDVRGEIL 542
           Y VG+ N + ++++   WGHS+ +V  E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 91  LIPITRPRKSPVSLFFVTTSPCREWVICA 5
           +IPI +  KS +SL F+T SPC  + IC+
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICS 70


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 223 AAHKCNYELFNRNNFSIRYWSWNYR 149
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 405 FLARFEHSNLFKVKLSAHLDTHRRAPR*DFD---IDPAF 298
           F A  +   L +  LS H+ TH  AP   FD    DP++
Sbjct: 143 FEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSY 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,156
Number of Sequences: 5004
Number of extensions: 43640
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)