Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1514
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39674-5|AAA80415.2|  229|Caenorhabditis elegans Ubiquitin conju...    29   3.3  
AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>U39674-5|AAA80415.2|  229|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein21 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 453 TEIIFYYSMHENIQAAFLARFEHSNL 376
           TEIIF+    E IQA F+ R  H N+
Sbjct: 88  TEIIFHIRAFEYIQAKFVTRIWHPNI 113


>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -2

Query: 271 CSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 152
           C  NV + P     DSA H  N   +N     I    WNY
Sbjct: 211 CLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 184 CCG*KARSCICAPRCRC 234
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 279 RRYAPQTCQYHRGCGAPTARRTNATTSFL 193
           R+  P+TC Y  G G  T  RT+ T + L
Sbjct: 130 RQQCPRTCGYCSGSGVVTTTRTSTTCADL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,242,016
Number of Sequences: 27780
Number of extensions: 266381
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)