Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1513
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   3.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   4.1  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    24   9.4  
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    24   9.4  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 314 NPSGSSTGKP*KRTGRTHKLTCR 382
           NP+   T KP KR  +T  LTCR
Sbjct: 18  NPNVEPTPKPTKRRTKTGCLTCR 40


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 225 DDSTTPRLPIEANGDLELI**TEQAACRQATLLVHQLASLRSAQE 359
           DDS TPRL ++ N  + +    E AA   + L V Q+ S   +++
Sbjct: 159 DDSDTPRLNVDMNDKINV---DEAAAKSDSKLNVDQINSTTESEK 200


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 153 GSRPIGFPDTPNRITVAVGD 212
           GSRP  FPD P+ I V+  D
Sbjct: 764 GSRPCAFPDNPD-ILVSPAD 782


>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 111 SAI*QRLLRFAKSSCSLDVCNLIK 40
           + I Q+L+ F + SC  +  NLIK
Sbjct: 42  AVIHQQLIEFFEKSCKQEYANLIK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,785
Number of Sequences: 5004
Number of extensions: 25563
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)