Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1513
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0846 - 21983581-21986055                                         30   0.55 
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    30   0.72 
12_02_0357 + 17941898-17943691                                         26   8.9  
10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569     26   8.9  
05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513           26   8.9  

>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 229 SSSPNLSPTATVILLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTA 92
           S  P   PT   + +G  GN + LD +K  +  ST+V   SN T A
Sbjct: 81  SDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVA 126


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 171 FPDTPNRITVAVG-DRFGDDDSTTPRLPIEANGDLELI 281
           F D P R T+A     FG DDS+ PRL  E N  L+ +
Sbjct: 661 FSDNPRRQTIAAAASLFGADDSSNPRLD-ELNKTLQAL 697


>12_02_0357 + 17941898-17943691
          Length = 597

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 280 INSKSPFASIGS-LGVVESSSPNLSPTATVILLGVSGNPIG 161
           +N+ S F  +G+ +GVV      ++PT  V+L+G + N  G
Sbjct: 65  LNTLSFFKDLGTNVGVVSGLVQQVAPTWAVLLIGAAMNLAG 105


>10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569
          Length = 474

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 301 AACSVYQINSKSPFASIGSLGVVESSSPNLSPTATVILLGVSG 173
           AAC     N K+P  ++GS G     + N +P   V  +GVSG
Sbjct: 248 AACFGEAKNEKAPGGAVGSFG----EATNANPPLAVEPVGVSG 286


>05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513
          Length = 621

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 110 DLIYTGAVSATLLRRIKADWI 172
           +LIY   VS TLL+ +K  WI
Sbjct: 534 ELIYITRVSGTLLKLVKETWI 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,538
Number of Sequences: 37544
Number of extensions: 182317
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)