Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1513
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    28   2.6  
AF047651-5|AAC02722.2|  702|Caenorhabditis elegans Germline-enha...    27   4.5  
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z95623-1|CAB09133.1|  314|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical
           protein ZC155.2 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 174 PDTPNRITVAVGD-RFGDDDSTTPRLPI 254
           P+ PNR+T+  GD R   DD+ T R+ +
Sbjct: 15  PNVPNRVTIPDGDLRRNSDDTATDRISL 42


>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
           protein F55A3.3 protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 283 QINSKSPFASIGSLGVVESSSPNLSPTATVIL 188
           Q    SPFA +G  GV   S+  L PTA+ ++
Sbjct: 794 QFEFDSPFAGLGFFGVPYRSATTLKPTASCLV 825


>Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical
           protein F38A6.1c protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 194 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 236


>Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical
           protein F38A6.1b protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 225 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 267


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331


>AF047651-5|AAC02722.2|  702|Caenorhabditis elegans
           Germline-enhanced at-hook proteinprotein 1 protein.
          Length = 702

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 141 PSFAGSRPIGFPDTPNRITVAVGDRFGDDD 230
           PS + +RP+G P T   +  AV  +  D+D
Sbjct: 529 PSSSAARPVGRPPTTQPVETAVEKKKNDED 558


>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 NLSPTATVILLGVSGNPIGLDPAKEGR*HSTS 122
           NLSP A  +  G +G+PI   P ++   +STS
Sbjct: 700 NLSPRARSVSFGTNGSPISTSPRRKA--NSTS 729


>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 NLSPTATVILLGVSGNPIGLDPAKEGR*HSTS 122
           NLSP A  +  G +G+PI   P ++   +STS
Sbjct: 826 NLSPRARSVSFGTNGSPISTSPRRKA--NSTS 855


>Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 NLSPTATVILLGVSGNPIGLDPAKEGR*HSTS 122
           NLSP A  +  G +G+PI   P ++   +STS
Sbjct: 826 NLSPRARSVSFGTNGSPISTSPRRKA--NSTS 855


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 NLSPTATVILLGVSGNPIGLDPAKEGR*HSTS 122
           NLSP A  +  G +G+PI   P ++   +STS
Sbjct: 700 NLSPRARSVSFGTNGSPISTSPRRKA--NSTS 729


>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 NLSPTATVILLGVSGNPIGLDPAKEGR*HSTS 122
           NLSP A  +  G +G+PI   P ++   +STS
Sbjct: 826 NLSPRARSVSFGTNGSPISTSPRRKA--NSTS 855


>Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 NLSPTATVILLGVSGNPIGLDPAKEGR*HSTS 122
           NLSP A  +  G +G+PI   P ++   +STS
Sbjct: 826 NLSPRARSVSFGTNGSPISTSPRRKA--NSTS 855


>Z95623-1|CAB09133.1|  314|Caenorhabditis elegans Hypothetical
           protein Y53C12C.1 protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 200 SCRRQIWR*RLNNAKTSDRSERRLRVDLID*ASCLSTSNPS---GSSTG 337
           S RR  WR    NA  SDR E R      D A  +S+ +PS   G  TG
Sbjct: 252 SNRRAKWR--KTNANGSDRDELRAERSETDDALSISSQSPSPGGGQETG 298


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 146 LRRIKADWIPGYT*QNHRSCRRQIWR 223
           + ++  +W+PG    N  +C R++WR
Sbjct: 456 ITKVAPEWVPGAAHDNVENC-REVWR 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,357,427
Number of Sequences: 27780
Number of extensions: 151151
Number of successful extensions: 424
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)